miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7933 5' -64.4 NC_001973.1 + 87539 0.67 0.525144
Target:  5'- cGGcCGGUGCCGguCGaGGCCGCaucGGCGGUu- -3'
miRNA:   3'- -CC-GCCGCGGC--GC-CCGGCG---CUGCUAca -5'
7933 5' -64.4 NC_001973.1 + 18806 0.67 0.519636
Target:  5'- cGCGGCGuuGCGcucguucgccgugcuGGCCaucgGCGACGAc-- -3'
miRNA:   3'- cCGCCGCggCGC---------------CCGG----CGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 51735 0.67 0.515978
Target:  5'- cGCGaGgGCaCGUGGGCCGUGuGCGAg-- -3'
miRNA:   3'- cCGC-CgCG-GCGCCCGGCGC-UGCUaca -5'
7933 5' -64.4 NC_001973.1 + 7751 0.67 0.497844
Target:  5'- uGCGGCGCgaacCGC-GGCgGCGGCGgcGUc -3'
miRNA:   3'- cCGCCGCG----GCGcCCGgCGCUGCuaCA- -5'
7933 5' -64.4 NC_001973.1 + 6209 0.67 0.497844
Target:  5'- cGGCGGCGCgGUGccGGC-GCGGCGcccUGUc -3'
miRNA:   3'- -CCGCCGCGgCGC--CCGgCGCUGCu--ACA- -5'
7933 5' -64.4 NC_001973.1 + 26625 0.67 0.488885
Target:  5'- uGGCGGCuuccaaguccgcGCCgGCGGGCCaGCGcaacACGAc-- -3'
miRNA:   3'- -CCGCCG------------CGG-CGCCCGG-CGC----UGCUaca -5'
7933 5' -64.4 NC_001973.1 + 98345 0.68 0.480002
Target:  5'- cGGCGGCGgCGCGcguucGGCCGCuuuCGGg-- -3'
miRNA:   3'- -CCGCCGCgGCGC-----CCGGCGcu-GCUaca -5'
7933 5' -64.4 NC_001973.1 + 86429 0.68 0.480002
Target:  5'- uGGCGGCuuacGUCaGCGacgacGGCCGCGGCGgcGg -3'
miRNA:   3'- -CCGCCG----CGG-CGC-----CCGGCGCUGCuaCa -5'
7933 5' -64.4 NC_001973.1 + 21277 0.68 0.480002
Target:  5'- cGCGGCGuCCGcCGGGCCGUcGCu---- -3'
miRNA:   3'- cCGCCGC-GGC-GCCCGGCGcUGcuaca -5'
7933 5' -64.4 NC_001973.1 + 7843 0.68 0.480002
Target:  5'- gGGCGGCGCCGCGcccgucgagcuGGCgCGCcagGGCGc--- -3'
miRNA:   3'- -CCGCCGCGGCGC-----------CCG-GCG---CUGCuaca -5'
7933 5' -64.4 NC_001973.1 + 70109 0.68 0.471199
Target:  5'- cGCGaaCGCCuCGGcGcCCGCGGCGAUGUc -3'
miRNA:   3'- cCGCc-GCGGcGCC-C-GGCGCUGCUACA- -5'
7933 5' -64.4 NC_001973.1 + 81171 0.68 0.453844
Target:  5'- cGGaucgGGCGUCGgGucggcGGCgGCGACGGUGUu -3'
miRNA:   3'- -CCg---CCGCGGCgC-----CCGgCGCUGCUACA- -5'
7933 5' -64.4 NC_001973.1 + 45208 0.68 0.436841
Target:  5'- uGGCcgGGCGCgaUGCGGGCCGCG-UGcUGc -3'
miRNA:   3'- -CCG--CCGCG--GCGCCCGGCGCuGCuACa -5'
7933 5' -64.4 NC_001973.1 + 38839 0.68 0.436841
Target:  5'- aGGCGGCgGCgGCGaGGgCGCgGGCGAa-- -3'
miRNA:   3'- -CCGCCG-CGgCGC-CCgGCG-CUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 145020 0.68 0.428478
Target:  5'- cGGCGGCGCCcgaguGCGGcGCgagCGCGuCGAg-- -3'
miRNA:   3'- -CCGCCGCGG-----CGCC-CG---GCGCuGCUaca -5'
7933 5' -64.4 NC_001973.1 + 56334 0.68 0.428478
Target:  5'- -uCGGCGCCGCGcucgcGGCCGCGcuCGGg-- -3'
miRNA:   3'- ccGCCGCGGCGC-----CCGGCGCu-GCUaca -5'
7933 5' -64.4 NC_001973.1 + 62676 0.68 0.427647
Target:  5'- cGCGaCGCCGCgcgcuaccgacgaGGGCgGCGACGAcGUc -3'
miRNA:   3'- cCGCcGCGGCG-------------CCCGgCGCUGCUaCA- -5'
7933 5' -64.4 NC_001973.1 + 152385 0.69 0.42021
Target:  5'- cGGcCGGCGCgGgCGGGCgCGgGGCGGc-- -3'
miRNA:   3'- -CC-GCCGCGgC-GCCCG-GCgCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 133453 0.69 0.42021
Target:  5'- aGuCGGCG-CGCGGGUCGCGcACGGa-- -3'
miRNA:   3'- cC-GCCGCgGCGCCCGGCGC-UGCUaca -5'
7933 5' -64.4 NC_001973.1 + 14358 0.69 0.42021
Target:  5'- uGGuCGGCGUgguCGaCGGGgCGCGGCGAg-- -3'
miRNA:   3'- -CC-GCCGCG---GC-GCCCgGCGCUGCUaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.