miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7933 5' -64.4 NC_001973.1 + 6117 0.66 0.589808
Target:  5'- cGGCgcgcgagGGCGCCGCGauacGCCGCcugGACGgcGg -3'
miRNA:   3'- -CCG-------CCGCGGCGCc---CGGCG---CUGCuaCa -5'
7933 5' -64.4 NC_001973.1 + 6209 0.67 0.497844
Target:  5'- cGGCGGCGCgGUGccGGC-GCGGCGcccUGUc -3'
miRNA:   3'- -CCGCCGCGgCGC--CCGgCGCUGCu--ACA- -5'
7933 5' -64.4 NC_001973.1 + 6506 0.71 0.322075
Target:  5'- cGGCugGGCGgCGCGGGCgUGCcGACGAUu- -3'
miRNA:   3'- -CCG--CCGCgGCGCCCG-GCG-CUGCUAca -5'
7933 5' -64.4 NC_001973.1 + 7751 0.67 0.497844
Target:  5'- uGCGGCGCgaacCGC-GGCgGCGGCGgcGUc -3'
miRNA:   3'- cCGCCGCG----GCGcCCGgCGCUGCuaCA- -5'
7933 5' -64.4 NC_001973.1 + 7843 0.68 0.480002
Target:  5'- gGGCGGCGCCGCGcccgucgagcuGGCgCGCcagGGCGc--- -3'
miRNA:   3'- -CCGCCGCGGCGC-----------CCG-GCG---CUGCuaca -5'
7933 5' -64.4 NC_001973.1 + 8201 0.72 0.2642
Target:  5'- cGGCaccgcuuGGCGCCGCuGGGCCGCcaagccGCGAgagGUg -3'
miRNA:   3'- -CCG-------CCGCGGCG-CCCGGCGc-----UGCUa--CA- -5'
7933 5' -64.4 NC_001973.1 + 8608 0.7 0.342407
Target:  5'- cGGCGGCcgcGCCGCGGacgacGCCGCcgaggccGACGAg-- -3'
miRNA:   3'- -CCGCCG---CGGCGCC-----CGGCG-------CUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 14358 0.69 0.42021
Target:  5'- uGGuCGGCGUgguCGaCGGGgCGCGGCGAg-- -3'
miRNA:   3'- -CC-GCCGCG---GC-GCCCgGCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 18806 0.67 0.519636
Target:  5'- cGCGGCGuuGCGcucguucgccgugcuGGCCaucgGCGACGAc-- -3'
miRNA:   3'- cCGCCGCggCGC---------------CCGG----CGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 21277 0.68 0.480002
Target:  5'- cGCGGCGuCCGcCGGGCCGUcGCu---- -3'
miRNA:   3'- cCGCCGC-GGC-GCCCGGCGcUGcuaca -5'
7933 5' -64.4 NC_001973.1 + 22815 0.7 0.343125
Target:  5'- cGGU-GCGCCGCGGGCUuccggaaGAUGGUGUu -3'
miRNA:   3'- -CCGcCGCGGCGCCCGGcg-----CUGCUACA- -5'
7933 5' -64.4 NC_001973.1 + 24168 0.7 0.372703
Target:  5'- uGGCGcUGCCGCuGcGGCCGCGGCGc--- -3'
miRNA:   3'- -CCGCcGCGGCG-C-CCGGCGCUGCuaca -5'
7933 5' -64.4 NC_001973.1 + 26625 0.67 0.488885
Target:  5'- uGGCGGCuuccaaguccgcGCCgGCGGGCCaGCGcaacACGAc-- -3'
miRNA:   3'- -CCGCCG------------CGG-CGCCCGG-CGC----UGCUaca -5'
7933 5' -64.4 NC_001973.1 + 27863 0.7 0.350358
Target:  5'- uGGCGGCcgcgGCCGCGGGCgCG-GGCGc--- -3'
miRNA:   3'- -CCGCCG----CGGCGCCCG-GCgCUGCuaca -5'
7933 5' -64.4 NC_001973.1 + 28949 0.71 0.314602
Target:  5'- gGGCGGCagcggggGCCGgcaguCGGGCgGCGACGcguUGUa -3'
miRNA:   3'- -CCGCCG-------CGGC-----GCCCGgCGCUGCu--ACA- -5'
7933 5' -64.4 NC_001973.1 + 29006 0.66 0.559555
Target:  5'- cGGCGGCugggcacagcacgcGUCGCGGuacGCCucgGCGACGAa-- -3'
miRNA:   3'- -CCGCCG--------------CGGCGCC---CGG---CGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 30392 0.69 0.403968
Target:  5'- gGGcCGGCGCgGC-GGCgGCGGCGGa-- -3'
miRNA:   3'- -CC-GCCGCGgCGcCCGgCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 31346 0.73 0.221057
Target:  5'- uGGCGcccGCGCucugCGUGGucGCCGCGGCGGUGUg -3'
miRNA:   3'- -CCGC---CGCG----GCGCC--CGGCGCUGCUACA- -5'
7933 5' -64.4 NC_001973.1 + 35088 0.7 0.328983
Target:  5'- aGCGGUacGCCGCGuGGCUGCGGCu---- -3'
miRNA:   3'- cCGCCG--CGGCGC-CCGGCGCUGcuaca -5'
7933 5' -64.4 NC_001973.1 + 35686 0.72 0.276764
Target:  5'- cGGCGGCGCgGUGgcGGCgaugCGCGACGAg-- -3'
miRNA:   3'- -CCGCCGCGgCGC--CCG----GCGCUGCUaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.