miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7933 5' -64.4 NC_001973.1 + 76991 0.7 0.340976
Target:  5'- aGCGGCGCCacgcugaucaccucGuCGGGCgGCGGCGGc-- -3'
miRNA:   3'- cCGCCGCGG--------------C-GCCCGgCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 81036 0.72 0.264788
Target:  5'- cGGCGGUa-UGCGGGCCGCGuCGAc-- -3'
miRNA:   3'- -CCGCCGcgGCGCCCGGCGCuGCUaca -5'
7933 5' -64.4 NC_001973.1 + 81171 0.68 0.453844
Target:  5'- cGGaucgGGCGUCGgGucggcGGCgGCGACGGUGUu -3'
miRNA:   3'- -CCg---CCGCGGCgC-----CCGgCGCUGCUACA- -5'
7933 5' -64.4 NC_001973.1 + 81815 0.75 0.159348
Target:  5'- -cCGGCGCCGCcGGCgGCGACGAg-- -3'
miRNA:   3'- ccGCCGCGGCGcCCGgCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 83730 0.73 0.221057
Target:  5'- aGCGGCGCCGCGu-CCGCGACuuggaGGUGg -3'
miRNA:   3'- cCGCCGCGGCGCccGGCGCUG-----CUACa -5'
7933 5' -64.4 NC_001973.1 + 86429 0.68 0.480002
Target:  5'- uGGCGGCuuacGUCaGCGacgacGGCCGCGGCGgcGg -3'
miRNA:   3'- -CCGCCG----CGG-CGC-----CCGGCGCUGCuaCa -5'
7933 5' -64.4 NC_001973.1 + 87539 0.67 0.525144
Target:  5'- cGGcCGGUGCCGguCGaGGCCGCaucGGCGGUu- -3'
miRNA:   3'- -CC-GCCGCGGC--GC-CCGGCG---CUGCUAca -5'
7933 5' -64.4 NC_001973.1 + 88485 0.66 0.5718
Target:  5'- -aCGGUGCCGCcGG-CGCGGCGcgGc -3'
miRNA:   3'- ccGCCGCGGCGcCCgGCGCUGCuaCa -5'
7933 5' -64.4 NC_001973.1 + 89378 0.67 0.538078
Target:  5'- uGGUGGCGaacugauaaaaaucuCCGUGGGUuuggaGCGAcuCGAUGUg -3'
miRNA:   3'- -CCGCCGC---------------GGCGCCCGg----CGCU--GCUACA- -5'
7933 5' -64.4 NC_001973.1 + 91557 0.7 0.328983
Target:  5'- cGGCGGCGUCGCacgcuuGUCGCGAUGAg-- -3'
miRNA:   3'- -CCGCCGCGGCGcc----CGGCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 94411 0.71 0.322075
Target:  5'- cGCGGCGCCGCccGGaCCGgCGGCGuUGg -3'
miRNA:   3'- cCGCCGCGGCGc-CC-GGC-GCUGCuACa -5'
7933 5' -64.4 NC_001973.1 + 95085 0.78 0.110867
Target:  5'- aGGCGcugcaGCGCucgugCGCGGGCCGCGACGAc-- -3'
miRNA:   3'- -CCGC-----CGCG-----GCGCCCGGCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 96582 0.66 0.543655
Target:  5'- cGCGGUgGCgGCGGcGCUGgCGACGAc-- -3'
miRNA:   3'- cCGCCG-CGgCGCC-CGGC-GCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 96771 0.66 0.590759
Target:  5'- gGGCGGCGUgGCGGccaaCGCGGCc---- -3'
miRNA:   3'- -CCGCCGCGgCGCCcg--GCGCUGcuaca -5'
7933 5' -64.4 NC_001973.1 + 98345 0.68 0.480002
Target:  5'- cGGCGGCGgCGCGcguucGGCCGCuuuCGGg-- -3'
miRNA:   3'- -CCGCCGCgGCGC-----CCGGCGcu-GCUaca -5'
7933 5' -64.4 NC_001973.1 + 103913 0.66 0.562374
Target:  5'- cGCGGCGCgacgaggagCGCGucGUCGCGGCGcgGg -3'
miRNA:   3'- cCGCCGCG---------GCGCc-CGGCGCUGCuaCa -5'
7933 5' -64.4 NC_001973.1 + 104024 0.74 0.206313
Target:  5'- cGCGGCGCCaGCaaccuagccGGGCCGuCGACGAc-- -3'
miRNA:   3'- cCGCCGCGG-CG---------CCCGGC-GCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 104268 0.71 0.315275
Target:  5'- cGGCGGCGCCGCcgccGGGCUG-GuCG-UGUc -3'
miRNA:   3'- -CCGCCGCGGCG----CCCGGCgCuGCuACA- -5'
7933 5' -64.4 NC_001973.1 + 109849 0.69 0.388129
Target:  5'- cGCGGCGUCGCc-GCCGCcGACGAg-- -3'
miRNA:   3'- cCGCCGCGGCGccCGGCG-CUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 111074 0.78 0.102991
Target:  5'- cGCGGCGCCcgacGUGGGCCGCGuCGAg-- -3'
miRNA:   3'- cCGCCGCGG----CGCCCGGCGCuGCUaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.