miRNA display CGI


Results 61 - 80 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7933 5' -64.4 NC_001973.1 + 121237 0.7 0.364399
Target:  5'- cGGCGGCGCgGCgcgucgcagaacaGGGUgGCGACGc--- -3'
miRNA:   3'- -CCGCCGCGgCG-------------CCCGgCGCUGCuaca -5'
7933 5' -64.4 NC_001973.1 + 121307 0.67 0.534371
Target:  5'- cGGCGcGCGCCgGCGGaCgCGCcGACGAg-- -3'
miRNA:   3'- -CCGC-CGCGG-CGCCcG-GCG-CUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 122544 0.7 0.372703
Target:  5'- cGGCGGCGgCGCuGGUgGUGGUGGUGg -3'
miRNA:   3'- -CCGCCGCgGCGcCCGgCGCUGCUACa -5'
7933 5' -64.4 NC_001973.1 + 122619 0.73 0.216045
Target:  5'- cGGCGGCGCCgacGCGGGCgC-CGGCGucgGUc -3'
miRNA:   3'- -CCGCCGCGG---CGCCCG-GcGCUGCua-CA- -5'
7933 5' -64.4 NC_001973.1 + 122666 0.8 0.076279
Target:  5'- cGCGGCGCCGuCGGGCCagaacgcGCGGCGAUc- -3'
miRNA:   3'- cCGCCGCGGC-GCCCGG-------CGCUGCUAca -5'
7933 5' -64.4 NC_001973.1 + 126560 0.7 0.365148
Target:  5'- uGUGGCgcaGCCGCGGGuCCGCGggcuugGCGAUc- -3'
miRNA:   3'- cCGCCG---CGGCGCCC-GGCGC------UGCUAca -5'
7933 5' -64.4 NC_001973.1 + 132225 0.66 0.5718
Target:  5'- uGGCGGCGCCGCGGuuuauaUGCacucucaGGUGUc -3'
miRNA:   3'- -CCGCCGCGGCGCCcg----GCGcug----CUACA- -5'
7933 5' -64.4 NC_001973.1 + 132446 0.69 0.403968
Target:  5'- uGGaGGCGCCgGCGGGgCGCGGCc---- -3'
miRNA:   3'- -CCgCCGCGG-CGCCCgGCGCUGcuaca -5'
7933 5' -64.4 NC_001973.1 + 132543 0.73 0.221057
Target:  5'- gGGCGcG-GCgGCGGGCucgagCGCGGCGGUGUg -3'
miRNA:   3'- -CCGC-CgCGgCGCCCG-----GCGCUGCUACA- -5'
7933 5' -64.4 NC_001973.1 + 133304 0.69 0.388129
Target:  5'- cGGCGGCGCCGUcg--CGCGGCGAa-- -3'
miRNA:   3'- -CCGCCGCGGCGcccgGCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 133453 0.69 0.42021
Target:  5'- aGuCGGCG-CGCGGGUCGCGcACGGa-- -3'
miRNA:   3'- cC-GCCGCgGCGCCCGGCGC-UGCUaca -5'
7933 5' -64.4 NC_001973.1 + 134796 0.66 0.543655
Target:  5'- uGCGGCcgucGgCGUGGuGCCGCGACaGAUa- -3'
miRNA:   3'- cCGCCG----CgGCGCC-CGGCGCUG-CUAca -5'
7933 5' -64.4 NC_001973.1 + 135897 0.78 0.105556
Target:  5'- aGCGGCgGUCGCGGGCCG-GACGAUcGUc -3'
miRNA:   3'- cCGCCG-CGGCGCCCGGCgCUGCUA-CA- -5'
7933 5' -64.4 NC_001973.1 + 138631 0.66 0.581264
Target:  5'- cGGCuGCGCCagcGCGGGCgGC-ACGGg-- -3'
miRNA:   3'- -CCGcCGCGG---CGCCCGgCGcUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 140039 0.66 0.543655
Target:  5'- gGGCuGCGCC-CGGGCgCuCGACGAg-- -3'
miRNA:   3'- -CCGcCGCGGcGCCCG-GcGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 140874 0.66 0.5718
Target:  5'- gGGCGuGCGCaucugCGCGGcGUCGCGcGCGAc-- -3'
miRNA:   3'- -CCGC-CGCG-----GCGCC-CGGCGC-UGCUaca -5'
7933 5' -64.4 NC_001973.1 + 145020 0.68 0.428478
Target:  5'- cGGCGGCGCCcgaguGCGGcGCgagCGCGuCGAg-- -3'
miRNA:   3'- -CCGCCGCGG-----CGCC-CG---GCGCuGCUaca -5'
7933 5' -64.4 NC_001973.1 + 146091 0.7 0.343125
Target:  5'- gGGCGGgGaCUaagGuCGGGCCGCGGCGcUGa -3'
miRNA:   3'- -CCGCCgC-GG---C-GCCCGGCGCUGCuACa -5'
7933 5' -64.4 NC_001973.1 + 152335 0.66 0.5718
Target:  5'- cGCGGUG-CGCGGGCgGgGcGCGAUa- -3'
miRNA:   3'- cCGCCGCgGCGCCCGgCgC-UGCUAca -5'
7933 5' -64.4 NC_001973.1 + 152385 0.69 0.42021
Target:  5'- cGGcCGGCGCgGgCGGGCgCGgGGCGGc-- -3'
miRNA:   3'- -CC-GCCGCGgC-GCCCG-GCgCUGCUaca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.