miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7933 5' -64.4 NC_001973.1 + 76991 0.7 0.340976
Target:  5'- aGCGGCGCCacgcugaucaccucGuCGGGCgGCGGCGGc-- -3'
miRNA:   3'- cCGCCGCGG--------------C-GCCCGgCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 74004 0.69 0.388129
Target:  5'- aGGCGGUcuagcaauugGUCGCGGGCguCGCacuCGAUGUg -3'
miRNA:   3'- -CCGCCG----------CGGCGCCCG--GCGcu-GCUACA- -5'
7933 5' -64.4 NC_001973.1 + 70109 0.68 0.471199
Target:  5'- cGCGaaCGCCuCGGcGcCCGCGGCGAUGUc -3'
miRNA:   3'- cCGCc-GCGGcGCC-C-GGCGCUGCUACA- -5'
7933 5' -64.4 NC_001973.1 + 62676 0.68 0.427647
Target:  5'- cGCGaCGCCGCgcgcuaccgacgaGGGCgGCGACGAcGUc -3'
miRNA:   3'- cCGCcGCGGCG-------------CCCGgCGCUGCUaCA- -5'
7933 5' -64.4 NC_001973.1 + 61101 0.66 0.561434
Target:  5'- cGCGGCcgacggagcagcgGCgGCGGGgCGCGGCGu--- -3'
miRNA:   3'- cCGCCG-------------CGgCGCCCgGCGCUGCuaca -5'
7933 5' -64.4 NC_001973.1 + 59925 0.7 0.365148
Target:  5'- cGC-GCGCCGCGGcGCCGCagcGCGAcGUg -3'
miRNA:   3'- cCGcCGCGGCGCC-CGGCGc--UGCUaCA- -5'
7933 5' -64.4 NC_001973.1 + 57200 0.66 0.590759
Target:  5'- -aCGGCGUUcagGgGGGCCGuCGACGAcGUc -3'
miRNA:   3'- ccGCCGCGG---CgCCCGGC-GCUGCUaCA- -5'
7933 5' -64.4 NC_001973.1 + 56334 0.68 0.428478
Target:  5'- -uCGGCGCCGCGcucgcGGCCGCGcuCGGg-- -3'
miRNA:   3'- ccGCCGCGGCGC-----CCGGCGCu-GCUaca -5'
7933 5' -64.4 NC_001973.1 + 55430 0.71 0.308585
Target:  5'- cGGCGGCG--GCGGGCC-CGACGGc-- -3'
miRNA:   3'- -CCGCCGCggCGCCCGGcGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 55229 0.73 0.236688
Target:  5'- aGGCGGCgGCgGCGGGCgGCGA-GAg-- -3'
miRNA:   3'- -CCGCCG-CGgCGCCCGgCGCUgCUaca -5'
7933 5' -64.4 NC_001973.1 + 53864 0.74 0.211131
Target:  5'- cGGCGGCGCCGcCGaGcGCgGCGGCcGUGg -3'
miRNA:   3'- -CCGCCGCGGC-GC-C-CGgCGCUGcUACa -5'
7933 5' -64.4 NC_001973.1 + 51735 0.67 0.515978
Target:  5'- cGCGaGgGCaCGUGGGCCGUGuGCGAg-- -3'
miRNA:   3'- cCGC-CgCG-GCGCCCGGCGC-UGCUaca -5'
7933 5' -64.4 NC_001973.1 + 50091 0.74 0.196963
Target:  5'- cGGCGGCGCCacggaGGGCgGCGGCGccGc -3'
miRNA:   3'- -CCGCCGCGGcg---CCCGgCGCUGCuaCa -5'
7933 5' -64.4 NC_001973.1 + 45851 0.71 0.3066
Target:  5'- gGGCcugGGCGUCGCGggcgcgcgcuccucGGCCGCGGCGcUGc -3'
miRNA:   3'- -CCG---CCGCGGCGC--------------CCGGCGCUGCuACa -5'
7933 5' -64.4 NC_001973.1 + 45208 0.68 0.436841
Target:  5'- uGGCcgGGCGCgaUGCGGGCCGCG-UGcUGc -3'
miRNA:   3'- -CCG--CCGCG--GCGCCCGGCGCuGCuACa -5'
7933 5' -64.4 NC_001973.1 + 40357 0.69 0.403968
Target:  5'- cGCGGUGaCCGUGuccguGuCCGCGACGAUGc -3'
miRNA:   3'- cCGCCGC-GGCGCc----C-GGCGCUGCUACa -5'
7933 5' -64.4 NC_001973.1 + 39403 0.67 0.525144
Target:  5'- cGGCGcGCGCCagGUcGGCCGCGGUGAg-- -3'
miRNA:   3'- -CCGC-CGCGG--CGcCCGGCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 38839 0.68 0.436841
Target:  5'- aGGCGGCgGCgGCGaGGgCGCgGGCGAa-- -3'
miRNA:   3'- -CCGCCG-CGgCGC-CCgGCG-CUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 38439 0.65 0.597421
Target:  5'- uGGCGcGCaCCGCGgccguuccguacuuGGCgGCGACGAg-- -3'
miRNA:   3'- -CCGC-CGcGGCGC--------------CCGgCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 38339 0.73 0.236688
Target:  5'- uGGCGGCgucaguGCCGCcGGCgGCGGCGAc-- -3'
miRNA:   3'- -CCGCCG------CGGCGcCCGgCGCUGCUaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.