miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7933 5' -64.4 NC_001973.1 + 152335 0.66 0.5718
Target:  5'- cGCGGUG-CGCGGGCgGgGcGCGAUa- -3'
miRNA:   3'- cCGCCGCgGCGCCCGgCgC-UGCUAca -5'
7933 5' -64.4 NC_001973.1 + 138631 0.66 0.581264
Target:  5'- cGGCuGCGCCagcGCGGGCgGC-ACGGg-- -3'
miRNA:   3'- -CCGcCGCGG---CGCCCGgCGcUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 6117 0.66 0.589808
Target:  5'- cGGCgcgcgagGGCGCCGCGauacGCCGCcugGACGgcGg -3'
miRNA:   3'- -CCG-------CCGCGGCGCc---CGGCG---CUGCuaCa -5'
7933 5' -64.4 NC_001973.1 + 57200 0.66 0.590759
Target:  5'- -aCGGCGUUcagGgGGGCCGuCGACGAcGUc -3'
miRNA:   3'- ccGCCGCGG---CgCCCGGC-GCUGCUaCA- -5'
7933 5' -64.4 NC_001973.1 + 96771 0.66 0.590759
Target:  5'- gGGCGGCGUgGCGGccaaCGCGGCc---- -3'
miRNA:   3'- -CCGCCGCGgCGCCcg--GCGCUGcuaca -5'
7933 5' -64.4 NC_001973.1 + 140039 0.66 0.543655
Target:  5'- gGGCuGCGCC-CGGGCgCuCGACGAg-- -3'
miRNA:   3'- -CCGcCGCGGcGCCCG-GcGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 89378 0.67 0.538078
Target:  5'- uGGUGGCGaacugauaaaaaucuCCGUGGGUuuggaGCGAcuCGAUGUg -3'
miRNA:   3'- -CCGCCGC---------------GGCGCCCGg----CGCU--GCUACA- -5'
7933 5' -64.4 NC_001973.1 + 21277 0.68 0.480002
Target:  5'- cGCGGCGuCCGcCGGGCCGUcGCu---- -3'
miRNA:   3'- cCGCCGC-GGC-GCCCGGCGcUGcuaca -5'
7933 5' -64.4 NC_001973.1 + 86429 0.68 0.480002
Target:  5'- uGGCGGCuuacGUCaGCGacgacGGCCGCGGCGgcGg -3'
miRNA:   3'- -CCGCCG----CGG-CGC-----CCGGCGCUGCuaCa -5'
7933 5' -64.4 NC_001973.1 + 98345 0.68 0.480002
Target:  5'- cGGCGGCGgCGCGcguucGGCCGCuuuCGGg-- -3'
miRNA:   3'- -CCGCCGCgGCGC-----CCGGCGcu-GCUaca -5'
7933 5' -64.4 NC_001973.1 + 26625 0.67 0.488885
Target:  5'- uGGCGGCuuccaaguccgcGCCgGCGGGCCaGCGcaacACGAc-- -3'
miRNA:   3'- -CCGCCG------------CGG-CGCCCGG-CGC----UGCUaca -5'
7933 5' -64.4 NC_001973.1 + 6209 0.67 0.497844
Target:  5'- cGGCGGCGCgGUGccGGC-GCGGCGcccUGUc -3'
miRNA:   3'- -CCGCCGCGgCGC--CCGgCGCUGCu--ACA- -5'
7933 5' -64.4 NC_001973.1 + 7751 0.67 0.497844
Target:  5'- uGCGGCGCgaacCGC-GGCgGCGGCGgcGUc -3'
miRNA:   3'- cCGCCGCG----GCGcCCGgCGCUGCuaCA- -5'
7933 5' -64.4 NC_001973.1 + 51735 0.67 0.515978
Target:  5'- cGCGaGgGCaCGUGGGCCGUGuGCGAg-- -3'
miRNA:   3'- cCGC-CgCG-GCGCCCGGCGC-UGCUaca -5'
7933 5' -64.4 NC_001973.1 + 18806 0.67 0.519636
Target:  5'- cGCGGCGuuGCGcucguucgccgugcuGGCCaucgGCGACGAc-- -3'
miRNA:   3'- cCGCCGCggCGC---------------CCGG----CGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 39403 0.67 0.525144
Target:  5'- cGGCGcGCGCCagGUcGGCCGCGGUGAg-- -3'
miRNA:   3'- -CCGC-CGCGG--CGcCCGGCGCUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 87539 0.67 0.525144
Target:  5'- cGGcCGGUGCCGguCGaGGCCGCaucGGCGGUu- -3'
miRNA:   3'- -CC-GCCGCGGC--GC-CCGGCG---CUGCUAca -5'
7933 5' -64.4 NC_001973.1 + 121307 0.67 0.534371
Target:  5'- cGGCGcGCGCCgGCGGaCgCGCcGACGAg-- -3'
miRNA:   3'- -CCGC-CGCGG-CGCCcG-GCG-CUGCUaca -5'
7933 5' -64.4 NC_001973.1 + 36330 0.67 0.534371
Target:  5'- cGCGGCcgaCGCGGGCCuCGGCGu--- -3'
miRNA:   3'- cCGCCGcg-GCGCCCGGcGCUGCuaca -5'
7933 5' -64.4 NC_001973.1 + 152435 0.67 0.534371
Target:  5'- gGGCGGCG-CGCaGGCuuaucgCGCGGCGGc-- -3'
miRNA:   3'- -CCGCCGCgGCGcCCG------GCGCUGCUaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.