miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7948 3' -54.3 NC_001973.1 + 4927 0.66 0.966258
Target:  5'- aCGUCG--GCGgGCUCGucgccGAcCGGCCGGUc -3'
miRNA:   3'- -GUAGCuuUGCgUGAGC-----CU-GCCGGUCG- -5'
7948 3' -54.3 NC_001973.1 + 123503 0.66 0.966258
Target:  5'- uCGUCGcacaccacGGCGCGCUCGc-CGGCgCAGUg -3'
miRNA:   3'- -GUAGCu-------UUGCGUGAGCcuGCCG-GUCG- -5'
7948 3' -54.3 NC_001973.1 + 91523 0.66 0.966258
Target:  5'- --gCGuAGCGUuuugACUUGGACG-CCGGCg -3'
miRNA:   3'- guaGCuUUGCG----UGAGCCUGCcGGUCG- -5'
7948 3' -54.3 NC_001973.1 + 146104 0.66 0.965939
Target:  5'- gGUCGGgccgcGGCGCugagccgGCUCGGGagcgGGCCGGg -3'
miRNA:   3'- gUAGCU-----UUGCG-------UGAGCCUg---CCGGUCg -5'
7948 3' -54.3 NC_001973.1 + 112735 0.66 0.964309
Target:  5'- gAUCGu--CGUAUUCGcGgcgaacggcgaccguGCGGCCGGCu -3'
miRNA:   3'- gUAGCuuuGCGUGAGC-C---------------UGCCGGUCG- -5'
7948 3' -54.3 NC_001973.1 + 28959 0.66 0.962966
Target:  5'- ---gGggGCcgGCAgUCGGGCGGCgAcGCg -3'
miRNA:   3'- guagCuuUG--CGUgAGCCUGCCGgU-CG- -5'
7948 3' -54.3 NC_001973.1 + 84142 0.66 0.962966
Target:  5'- aAUCGAGucGCGCaACUCGa--GGCCgaGGCg -3'
miRNA:   3'- gUAGCUU--UGCG-UGAGCcugCCGG--UCG- -5'
7948 3' -54.3 NC_001973.1 + 107069 0.66 0.962966
Target:  5'- aAUCGcgcGCGCACUCGaGcCGGUC-GCu -3'
miRNA:   3'- gUAGCuu-UGCGUGAGC-CuGCCGGuCG- -5'
7948 3' -54.3 NC_001973.1 + 36861 0.66 0.962966
Target:  5'- -cUCGgcGCGCGCUcuguucgacgaCGGGCGcGCCgAGUu -3'
miRNA:   3'- guAGCuuUGCGUGA-----------GCCUGC-CGG-UCG- -5'
7948 3' -54.3 NC_001973.1 + 55782 0.66 0.962966
Target:  5'- gCGUCGcucGGCGCGCuUCGGAaaaacgcuCGGCUcgaacGGCg -3'
miRNA:   3'- -GUAGCu--UUGCGUG-AGCCU--------GCCGG-----UCG- -5'
7948 3' -54.3 NC_001973.1 + 57188 0.66 0.962966
Target:  5'- aGUCGAGACGCGacggcgUUCaGGGgGGCCGu- -3'
miRNA:   3'- gUAGCUUUGCGU------GAG-CCUgCCGGUcg -5'
7948 3' -54.3 NC_001973.1 + 63278 0.66 0.962966
Target:  5'- -uUCG--GCGCGgUCGGGCGGgaCGGUu -3'
miRNA:   3'- guAGCuuUGCGUgAGCCUGCCg-GUCG- -5'
7948 3' -54.3 NC_001973.1 + 109374 0.66 0.962966
Target:  5'- gGUCGAcgAGCGC-CUCGua-GGCgCGGCg -3'
miRNA:   3'- gUAGCU--UUGCGuGAGCcugCCG-GUCG- -5'
7948 3' -54.3 NC_001973.1 + 56468 0.66 0.959455
Target:  5'- -cUCG--GCGCcaaGCUCGGGCggGGCgGGCu -3'
miRNA:   3'- guAGCuuUGCG---UGAGCCUG--CCGgUCG- -5'
7948 3' -54.3 NC_001973.1 + 56495 0.66 0.959455
Target:  5'- -cUCG--GCGCcaaGCUCGGGCggGGCgGGCu -3'
miRNA:   3'- guAGCuuUGCG---UGAGCCUG--CCGgUCG- -5'
7948 3' -54.3 NC_001973.1 + 56522 0.66 0.959455
Target:  5'- -cUCG--GCGCcaaGCUCGGGCggGGCgGGCu -3'
miRNA:   3'- guAGCuuUGCG---UGAGCCUG--CCGgUCG- -5'
7948 3' -54.3 NC_001973.1 + 73647 0.66 0.959455
Target:  5'- -cUCGu--CGCACUCGuuGAgGcGCCGGCc -3'
miRNA:   3'- guAGCuuuGCGUGAGC--CUgC-CGGUCG- -5'
7948 3' -54.3 NC_001973.1 + 109173 0.66 0.959455
Target:  5'- gGUCGcccGCGCGCUCGccgaGCGcGCCGcGCa -3'
miRNA:   3'- gUAGCuu-UGCGUGAGCc---UGC-CGGU-CG- -5'
7948 3' -54.3 NC_001973.1 + 145974 0.66 0.959455
Target:  5'- gGUCgGGAGCGgGCUCGaagcauCGaGCCGGCu -3'
miRNA:   3'- gUAG-CUUUGCgUGAGCcu----GC-CGGUCG- -5'
7948 3' -54.3 NC_001973.1 + 56441 0.66 0.959455
Target:  5'- -cUCG--GCGCcaaGCUCGGGCggGGCgGGCu -3'
miRNA:   3'- guAGCuuUGCG---UGAGCCUG--CCGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.