miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7951 5' -57 NC_001973.1 + 89171 0.66 0.884847
Target:  5'- -cGUCuCCuggcACUGcAGGCGCugcgcCGCCCGg -3'
miRNA:   3'- gaCAG-GGu---UGAC-UUCGCGu----GCGGGCa -5'
7951 5' -57 NC_001973.1 + 44961 0.66 0.884847
Target:  5'- -cGUCUCGAagUUGGGcCGCACGUCCGg -3'
miRNA:   3'- gaCAGGGUU--GACUUcGCGUGCGGGCa -5'
7951 5' -57 NC_001973.1 + 136752 0.66 0.877856
Target:  5'- -cGUCUCGucGCgcacGuuGCGCACGCUCGUc -3'
miRNA:   3'- gaCAGGGU--UGa---CuuCGCGUGCGGGCA- -5'
7951 5' -57 NC_001973.1 + 88549 0.66 0.87065
Target:  5'- -gGUCcacgCCGGCgucGGCGCGCGCCCu- -3'
miRNA:   3'- gaCAG----GGUUGacuUCGCGUGCGGGca -5'
7951 5' -57 NC_001973.1 + 141395 0.66 0.863231
Target:  5'- -cGUCCCAcCUGuucGUGCG-GCCCGa -3'
miRNA:   3'- gaCAGGGUuGACuu-CGCGUgCGGGCa -5'
7951 5' -57 NC_001973.1 + 160094 0.66 0.863231
Target:  5'- gCUGUUCCAAgUGcuuuuGGCGcUugGCCUGUu -3'
miRNA:   3'- -GACAGGGUUgACu----UCGC-GugCGGGCA- -5'
7951 5' -57 NC_001973.1 + 56168 0.66 0.863231
Target:  5'- aCUGUCgUcGCUGucGGCgGCGCGCUCGa -3'
miRNA:   3'- -GACAGgGuUGACu-UCG-CGUGCGGGCa -5'
7951 5' -57 NC_001973.1 + 64867 0.66 0.855607
Target:  5'- -cGUCCCuGCg--GGCuCGCGCCCGa -3'
miRNA:   3'- gaCAGGGuUGacuUCGcGUGCGGGCa -5'
7951 5' -57 NC_001973.1 + 24583 0.67 0.847784
Target:  5'- -cG-CCCAguACUGggGCgGCAUGCaCCGc -3'
miRNA:   3'- gaCaGGGU--UGACuuCG-CGUGCG-GGCa -5'
7951 5' -57 NC_001973.1 + 20886 0.67 0.839767
Target:  5'- -cGUCCCGACUuu-GCGauCGCCCGa -3'
miRNA:   3'- gaCAGGGUUGAcuuCGCguGCGGGCa -5'
7951 5' -57 NC_001973.1 + 61187 0.67 0.831564
Target:  5'- --cUCCUcGCUGAA-CGCGCGCUCGg -3'
miRNA:   3'- gacAGGGuUGACUUcGCGUGCGGGCa -5'
7951 5' -57 NC_001973.1 + 51845 0.67 0.823182
Target:  5'- uCUGUgCgAGCUG-GGCGCcgucgagcacACGCCCGa -3'
miRNA:   3'- -GACAgGgUUGACuUCGCG----------UGCGGGCa -5'
7951 5' -57 NC_001973.1 + 21563 0.67 0.814628
Target:  5'- -gGUCCCGGCgcgcgggguUGAAGUGCuCGCCgGc -3'
miRNA:   3'- gaCAGGGUUG---------ACUUCGCGuGCGGgCa -5'
7951 5' -57 NC_001973.1 + 123049 0.67 0.814628
Target:  5'- uCUGUCgaCCGGCacgGGAcGCGCucuCGCCCGg -3'
miRNA:   3'- -GACAG--GGUUGa--CUU-CGCGu--GCGGGCa -5'
7951 5' -57 NC_001973.1 + 127261 0.67 0.805911
Target:  5'- -cGUCCCGACguu-GCGaC-CGCCCGa -3'
miRNA:   3'- gaCAGGGUUGacuuCGC-GuGCGGGCa -5'
7951 5' -57 NC_001973.1 + 92803 0.68 0.788019
Target:  5'- -aGUCCaaguucgguGCUGggGCGUcgucAUGCCCGa -3'
miRNA:   3'- gaCAGGgu-------UGACuuCGCG----UGCGGGCa -5'
7951 5' -57 NC_001973.1 + 86451 0.68 0.788019
Target:  5'- -cGgCCgCGGCggcggcgGAAGCGCgcGCGCCCGUa -3'
miRNA:   3'- gaCaGG-GUUGa------CUUCGCG--UGCGGGCA- -5'
7951 5' -57 NC_001973.1 + 7605 0.68 0.788019
Target:  5'- --aUCCCGcCUuuucGCGCACGCCCGa -3'
miRNA:   3'- gacAGGGUuGAcuu-CGCGUGCGGGCa -5'
7951 5' -57 NC_001973.1 + 158741 0.68 0.760163
Target:  5'- -aGU-CCAGCUGAAGCcggcgaccgaGCGCGCgCCGa -3'
miRNA:   3'- gaCAgGGUUGACUUCG----------CGUGCG-GGCa -5'
7951 5' -57 NC_001973.1 + 128912 0.69 0.741018
Target:  5'- -cGUCCCGACUuu-GCGaC-CGCCCGa -3'
miRNA:   3'- gaCAGGGUUGAcuuCGC-GuGCGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.