miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7957 5' -54.5 NC_001973.1 + 140077 0.66 0.951996
Target:  5'- cGCAGCgucaccuGCUCGUCGUcaggucgaugagcgaGCGCGcggcCGUGa -3'
miRNA:   3'- aCGUCG-------UGAGCAGCG---------------UGCGCua--GUAC- -5'
7957 5' -54.5 NC_001973.1 + 49745 0.66 0.950755
Target:  5'- cGguGCugUgCGUgGCGCGCGAcggCAc- -3'
miRNA:   3'- aCguCGugA-GCAgCGUGCGCUa--GUac -5'
7957 5' -54.5 NC_001973.1 + 96824 0.66 0.950755
Target:  5'- cGCGGCGCUCGcCGgCGC-CGAcuaUCAa- -3'
miRNA:   3'- aCGUCGUGAGCaGC-GUGcGCU---AGUac -5'
7957 5' -54.5 NC_001973.1 + 86870 0.66 0.950755
Target:  5'- cUGCGGCAUggUCGUCGUgaagcugcaGCGCGG-CGa- -3'
miRNA:   3'- -ACGUCGUG--AGCAGCG---------UGCGCUaGUac -5'
7957 5' -54.5 NC_001973.1 + 73641 0.66 0.950755
Target:  5'- cGC-GCGCUCGUCGCACuCGu---UGa -3'
miRNA:   3'- aCGuCGUGAGCAGCGUGcGCuaguAC- -5'
7957 5' -54.5 NC_001973.1 + 68277 0.66 0.950755
Target:  5'- aGCGGCgaaaaagcugaACUUGUCGCACGacucGUCGUc -3'
miRNA:   3'- aCGUCG-----------UGAGCAGCGUGCgc--UAGUAc -5'
7957 5' -54.5 NC_001973.1 + 122542 0.66 0.946464
Target:  5'- aGCGGCGg-CGgCGCugGUGGUgGUGg -3'
miRNA:   3'- aCGUCGUgaGCaGCGugCGCUAgUAC- -5'
7957 5' -54.5 NC_001973.1 + 40128 0.66 0.946464
Target:  5'- gGUGGCgACUCGUCGCGC-CcAUCGUc -3'
miRNA:   3'- aCGUCG-UGAGCAGCGUGcGcUAGUAc -5'
7957 5' -54.5 NC_001973.1 + 106966 0.66 0.946464
Target:  5'- gGC-GCGCUCGgcgUGCGCGCGcugCAg- -3'
miRNA:   3'- aCGuCGUGAGCa--GCGUGCGCua-GUac -5'
7957 5' -54.5 NC_001973.1 + 108742 0.66 0.946464
Target:  5'- cGUcGCGCUCGUCG-ACGCGGcgCGg- -3'
miRNA:   3'- aCGuCGUGAGCAGCgUGCGCUa-GUac -5'
7957 5' -54.5 NC_001973.1 + 122666 0.66 0.946464
Target:  5'- cGCGGCGC-CGUCgggccagaacGCGCGgCGAUCc-- -3'
miRNA:   3'- aCGUCGUGaGCAG----------CGUGC-GCUAGuac -5'
7957 5' -54.5 NC_001973.1 + 122703 0.66 0.941933
Target:  5'- cGCAGCAgUCGUucgacCGCGcCGuCGGUCGc- -3'
miRNA:   3'- aCGUCGUgAGCA-----GCGU-GC-GCUAGUac -5'
7957 5' -54.5 NC_001973.1 + 96522 0.66 0.941933
Target:  5'- cGCuuCGCUCGa-GCGCGCGAUCc-- -3'
miRNA:   3'- aCGucGUGAGCagCGUGCGCUAGuac -5'
7957 5' -54.5 NC_001973.1 + 56712 0.66 0.937161
Target:  5'- aGCAcGCGCUCGUCGCucACcCGGuUCAa- -3'
miRNA:   3'- aCGU-CGUGAGCAGCG--UGcGCU-AGUac -5'
7957 5' -54.5 NC_001973.1 + 74984 0.66 0.937161
Target:  5'- gGCAGCggguGCUCGgCGUugGUGcgcuUCAUGu -3'
miRNA:   3'- aCGUCG----UGAGCaGCGugCGCu---AGUAC- -5'
7957 5' -54.5 NC_001973.1 + 121380 0.66 0.937161
Target:  5'- gGCcgacGCGCcCGUCaccgggaacaGCACGCGAUCGUu -3'
miRNA:   3'- aCGu---CGUGaGCAG----------CGUGCGCUAGUAc -5'
7957 5' -54.5 NC_001973.1 + 5886 0.66 0.937161
Target:  5'- gUGCGGCGCag--CGCGCGCGAcgCGa- -3'
miRNA:   3'- -ACGUCGUGagcaGCGUGCGCUa-GUac -5'
7957 5' -54.5 NC_001973.1 + 109319 0.66 0.937161
Target:  5'- aGgAGCg--CGUCGCGCGCGAaCcgGa -3'
miRNA:   3'- aCgUCGugaGCAGCGUGCGCUaGuaC- -5'
7957 5' -54.5 NC_001973.1 + 133386 0.66 0.937161
Target:  5'- uUGguGCGCgCGUCGaUGCGCaGAUCGg- -3'
miRNA:   3'- -ACguCGUGaGCAGC-GUGCG-CUAGUac -5'
7957 5' -54.5 NC_001973.1 + 51671 0.66 0.937161
Target:  5'- cGCGGagGCgCG-CGCGCGCGAUCu-- -3'
miRNA:   3'- aCGUCg-UGaGCaGCGUGCGCUAGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.