miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7958 3' -53.2 NC_001973.1 + 122712 0.66 0.975021
Target:  5'- -cGUUCGACCGCgC-CGUc--GGUCGCg -3'
miRNA:   3'- cuUAAGCUGGCG-GcGCAcuuCCAGUG- -5'
7958 3' -53.2 NC_001973.1 + 63627 0.66 0.975021
Target:  5'- ----aCGGCCaaaucgGCCGCGUGggGcGgCGCg -3'
miRNA:   3'- cuuaaGCUGG------CGGCGCACuuC-CaGUG- -5'
7958 3' -53.2 NC_001973.1 + 72828 0.66 0.96629
Target:  5'- cGAGgccggCGGCCGCCGCGcaguccgaugGAccGUCGCc -3'
miRNA:   3'- -CUUaa---GCUGGCGGCGCa---------CUucCAGUG- -5'
7958 3' -53.2 NC_001973.1 + 55628 0.66 0.96629
Target:  5'- ----gCGAgCG-CGCGUGcAGGUCGCu -3'
miRNA:   3'- cuuaaGCUgGCgGCGCACuUCCAGUG- -5'
7958 3' -53.2 NC_001973.1 + 86130 0.67 0.959392
Target:  5'- ---cUCGGa--CCGCGUGGAGGUgACg -3'
miRNA:   3'- cuuaAGCUggcGGCGCACUUCCAgUG- -5'
7958 3' -53.2 NC_001973.1 + 131606 0.67 0.959392
Target:  5'- ---cUCGGCCGCCGUcucgucGUcGAAGcUCACg -3'
miRNA:   3'- cuuaAGCUGGCGGCG------CA-CUUCcAGUG- -5'
7958 3' -53.2 NC_001973.1 + 43939 0.67 0.955602
Target:  5'- ---cUCGACgGCCGC--GAAGGcCACc -3'
miRNA:   3'- cuuaAGCUGgCGGCGcaCUUCCaGUG- -5'
7958 3' -53.2 NC_001973.1 + 105493 0.67 0.955602
Target:  5'- cGGGcgCGuuGCCGCCGUaGUuGAGGUCGCa -3'
miRNA:   3'- -CUUaaGC--UGGCGGCG-CAcUUCCAGUG- -5'
7958 3' -53.2 NC_001973.1 + 70435 0.67 0.955602
Target:  5'- cGAAcUCGACCGcCCGCucGGAGcUCACg -3'
miRNA:   3'- -CUUaAGCUGGC-GGCGcaCUUCcAGUG- -5'
7958 3' -53.2 NC_001973.1 + 85724 0.67 0.94732
Target:  5'- ---cUCGGCCGCacgGCGuUGGAguuGGUCGCc -3'
miRNA:   3'- cuuaAGCUGGCGg--CGC-ACUU---CCAGUG- -5'
7958 3' -53.2 NC_001973.1 + 25927 0.68 0.942819
Target:  5'- ---cUCG-CCGCCGCGgGcGGGcUCGCg -3'
miRNA:   3'- cuuaAGCuGGCGGCGCaCuUCC-AGUG- -5'
7958 3' -53.2 NC_001973.1 + 63679 0.68 0.916647
Target:  5'- ----aCGACCGgUGCGUGGAGccgCACg -3'
miRNA:   3'- cuuaaGCUGGCgGCGCACUUCca-GUG- -5'
7958 3' -53.2 NC_001973.1 + 119299 0.69 0.910675
Target:  5'- ---gUUGACCGUCGCGUucaaGAgcGGGUCGg -3'
miRNA:   3'- cuuaAGCUGGCGGCGCA----CU--UCCAGUg -5'
7958 3' -53.2 NC_001973.1 + 147061 0.69 0.884379
Target:  5'- cGGUUCGuGCCGaucuggCGCGUGGAGGgCGCg -3'
miRNA:   3'- cUUAAGC-UGGCg-----GCGCACUUCCaGUG- -5'
7958 3' -53.2 NC_001973.1 + 17327 0.7 0.869835
Target:  5'- cGGcgUCGAacaGUCcCGUGggGGUCACg -3'
miRNA:   3'- -CUuaAGCUgg-CGGcGCACuuCCAGUG- -5'
7958 3' -53.2 NC_001973.1 + 27610 0.71 0.812352
Target:  5'- ----aCGGCCGCCGCGUugacGAAGcaccgccuGUCGCa -3'
miRNA:   3'- cuuaaGCUGGCGGCGCA----CUUC--------CAGUG- -5'
7958 3' -53.2 NC_001973.1 + 143486 0.71 0.803401
Target:  5'- ----cCGGuCCGCgGCGUcgucGAGGGUCACg -3'
miRNA:   3'- cuuaaGCU-GGCGgCGCA----CUUCCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.