miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7958 5' -54.9 NC_001973.1 + 90533 0.66 0.937282
Target:  5'- gGCuuguUGGAGCGaGCCAucaaagcguaaACGCCcggcucGAGCACa -3'
miRNA:   3'- -UGu---ACUUCGCgUGGU-----------UGCGG------CUCGUG- -5'
7958 5' -54.9 NC_001973.1 + 3567 0.66 0.937282
Target:  5'- ---cGggGCGCgcgaugACCGACGgCGcGCGCu -3'
miRNA:   3'- uguaCuuCGCG------UGGUUGCgGCuCGUG- -5'
7958 5' -54.9 NC_001973.1 + 45610 0.66 0.93679
Target:  5'- ---cGGAGCGCGucggcgaucagguCCAcgcgcuCGUCGAGCGCg -3'
miRNA:   3'- uguaCUUCGCGU-------------GGUu-----GCGGCUCGUG- -5'
7958 5' -54.9 NC_001973.1 + 35375 0.66 0.934293
Target:  5'- uACuuuuuGCGCGCCGcgcuccacggcuaccGCGCCGcGCGCa -3'
miRNA:   3'- -UGuacuuCGCGUGGU---------------UGCGGCuCGUG- -5'
7958 5' -54.9 NC_001973.1 + 78202 0.66 0.932251
Target:  5'- cGCAUcaacGAGGCGCGCCAcuugacCGUCGAcgaucugaacGCGCu -3'
miRNA:   3'- -UGUA----CUUCGCGUGGUu-----GCGGCU----------CGUG- -5'
7958 5' -54.9 NC_001973.1 + 42234 0.66 0.926972
Target:  5'- uACAaggGcAAGCGcCACCAACGCC-AGCu- -3'
miRNA:   3'- -UGUa--C-UUCGC-GUGGUUGCGGcUCGug -5'
7958 5' -54.9 NC_001973.1 + 95526 0.66 0.926972
Target:  5'- aGC-UGAccAGCGcCAUCGGCGCCG-GCGa -3'
miRNA:   3'- -UGuACU--UCGC-GUGGUUGCGGCuCGUg -5'
7958 5' -54.9 NC_001973.1 + 101976 0.66 0.926972
Target:  5'- ---cGAuGCGCGCCAGCGuguCCGuGUGCu -3'
miRNA:   3'- uguaCUuCGCGUGGUUGC---GGCuCGUG- -5'
7958 5' -54.9 NC_001973.1 + 26530 0.66 0.926972
Target:  5'- gACGU--AGCGC-UCAAagucgGCCGAGCGCa -3'
miRNA:   3'- -UGUAcuUCGCGuGGUUg----CGGCUCGUG- -5'
7958 5' -54.9 NC_001973.1 + 146003 0.66 0.926972
Target:  5'- gGCucggGGAGCGggucCGCCGGC-UCGAGCGCg -3'
miRNA:   3'- -UGua--CUUCGC----GUGGUUGcGGCUCGUG- -5'
7958 5' -54.9 NC_001973.1 + 61684 0.66 0.926972
Target:  5'- gGCGcGAAGCgGCGUCGGCGCgcuCGAGCAUc -3'
miRNA:   3'- -UGUaCUUCG-CGUGGUUGCG---GCUCGUG- -5'
7958 5' -54.9 NC_001973.1 + 120742 0.66 0.926972
Target:  5'- cCGUGuGGCGCGCgCAGcCGCCGAcguguuccGCAa -3'
miRNA:   3'- uGUACuUCGCGUG-GUU-GCGGCU--------CGUg -5'
7958 5' -54.9 NC_001973.1 + 123285 0.66 0.923687
Target:  5'- gGCcgGGcaGGCGCgGCCAGCGCaccgcguagccgccgCGAGCGg -3'
miRNA:   3'- -UGuaCU--UCGCG-UGGUUGCG---------------GCUCGUg -5'
7958 5' -54.9 NC_001973.1 + 56061 0.66 0.921448
Target:  5'- gACAgGGAGCGC-UCGGaGCCuGAGCGCu -3'
miRNA:   3'- -UGUaCUUCGCGuGGUUgCGG-CUCGUG- -5'
7958 5' -54.9 NC_001973.1 + 56195 0.66 0.921448
Target:  5'- gACGUaGucGCuuucgucgGCGUCGGCGCCGGGCGCg -3'
miRNA:   3'- -UGUA-CuuCG--------CGUGGUUGCGGCUCGUG- -5'
7958 5' -54.9 NC_001973.1 + 157313 0.66 0.921448
Target:  5'- aACGUGGAGgGCgaACCGGCGaUCuuGCACa -3'
miRNA:   3'- -UGUACUUCgCG--UGGUUGC-GGcuCGUG- -5'
7958 5' -54.9 NC_001973.1 + 15999 0.66 0.921448
Target:  5'- ----uGAGCGCGCCgGACGaCCGAugGCGCc -3'
miRNA:   3'- uguacUUCGCGUGG-UUGC-GGCU--CGUG- -5'
7958 5' -54.9 NC_001973.1 + 105877 0.66 0.921448
Target:  5'- -gAUGAcgguGGCGa--CGACGCCGAGCugGCg -3'
miRNA:   3'- ugUACU----UCGCgugGUUGCGGCUCG--UG- -5'
7958 5' -54.9 NC_001973.1 + 113570 0.66 0.921448
Target:  5'- aGCA--GGGCGCuuuuGCCggUGCCG-GCGCu -3'
miRNA:   3'- -UGUacUUCGCG----UGGuuGCGGCuCGUG- -5'
7958 5' -54.9 NC_001973.1 + 118357 0.66 0.921448
Target:  5'- cCGUGAAGCGCGaguUCGAC-UCGGGCGa -3'
miRNA:   3'- uGUACUUCGCGU---GGUUGcGGCUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.