miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7958 5' -54.9 NC_001973.1 + 1800 0.73 0.560153
Target:  5'- cGCAgGAAcGCGUACUGGucccCGCCGAGCGCg -3'
miRNA:   3'- -UGUaCUU-CGCGUGGUU----GCGGCUCGUG- -5'
7958 5' -54.9 NC_001973.1 + 3366 0.67 0.90966
Target:  5'- -gGUGGuaguccGCGuCGCCGugguUGCCGAGCGCc -3'
miRNA:   3'- ugUACUu-----CGC-GUGGUu---GCGGCUCGUG- -5'
7958 5' -54.9 NC_001973.1 + 3567 0.66 0.937282
Target:  5'- ---cGggGCGCgcgaugACCGACGgCGcGCGCu -3'
miRNA:   3'- uguaCuuCGCG------UGGUUGCgGCuCGUG- -5'
7958 5' -54.9 NC_001973.1 + 3895 0.68 0.868554
Target:  5'- ---cGAGGCGuCGCUcuGCGCCGGGUAg -3'
miRNA:   3'- uguaCUUCGC-GUGGu-UGCGGCUCGUg -5'
7958 5' -54.9 NC_001973.1 + 4004 0.71 0.704775
Target:  5'- ---aGggGaCGCGCUugaacGCGCUGAGCGCg -3'
miRNA:   3'- uguaCuuC-GCGUGGu----UGCGGCUCGUG- -5'
7958 5' -54.9 NC_001973.1 + 4210 0.69 0.800899
Target:  5'- uGCAUGcgcuggaAGGCGCGCC--UGCCG-GCGCu -3'
miRNA:   3'- -UGUAC-------UUCGCGUGGuuGCGGCuCGUG- -5'
7958 5' -54.9 NC_001973.1 + 6110 0.69 0.828254
Target:  5'- cGCAUGAcGGCGCGCgAggGCGCCGcGaUACg -3'
miRNA:   3'- -UGUACU-UCGCGUGgU--UGCGGCuC-GUG- -5'
7958 5' -54.9 NC_001973.1 + 7056 0.7 0.744887
Target:  5'- uCGUGAAcgagcuGCGCGCCcugGUCGAGCGCg -3'
miRNA:   3'- uGUACUU------CGCGUGGuugCGGCUCGUG- -5'
7958 5' -54.9 NC_001973.1 + 7713 0.67 0.883185
Target:  5'- ----cGAGCGCGCCGcccgcccgacugACGCUgGAGCACc -3'
miRNA:   3'- uguacUUCGCGUGGU------------UGCGG-CUCGUG- -5'
7958 5' -54.9 NC_001973.1 + 7857 0.7 0.771079
Target:  5'- cCGUcGAgcuGGCGCGCCAgggcgcguuuugcaACGCCGccGGCGCg -3'
miRNA:   3'- uGUA-CU---UCGCGUGGU--------------UGCGGC--UCGUG- -5'
7958 5' -54.9 NC_001973.1 + 7931 0.71 0.673993
Target:  5'- cGCGUGu-GCGCgGCCGGCGUgGuGCACg -3'
miRNA:   3'- -UGUACuuCGCG-UGGUUGCGgCuCGUG- -5'
7958 5' -54.9 NC_001973.1 + 8183 0.69 0.801807
Target:  5'- gACGgacGAGCGCGCCGACGgcaCCGcuuGGCGCc -3'
miRNA:   3'- -UGUac-UUCGCGUGGUUGC---GGC---UCGUG- -5'
7958 5' -54.9 NC_001973.1 + 9092 0.72 0.622098
Target:  5'- cGCGUGAgcucGGCGCGCauccGCGCCGcguuGCGCu -3'
miRNA:   3'- -UGUACU----UCGCGUGgu--UGCGGCu---CGUG- -5'
7958 5' -54.9 NC_001973.1 + 10744 0.78 0.318124
Target:  5'- ---cGAAGCGCAUCAGCGgCGGGUGCg -3'
miRNA:   3'- uguaCUUCGCGUGGUUGCgGCUCGUG- -5'
7958 5' -54.9 NC_001973.1 + 10839 0.69 0.828254
Target:  5'- aGCGUGAucAGCGCcaacagccACCAcauCGCCGAuGCAg -3'
miRNA:   3'- -UGUACU--UCGCG--------UGGUu--GCGGCU-CGUg -5'
7958 5' -54.9 NC_001973.1 + 11251 0.73 0.560153
Target:  5'- cGCAgGAAcGCGUACUGGucccCGCCGAGCGCg -3'
miRNA:   3'- -UGUaCUU-CGCGUGGUU----GCGGCUCGUG- -5'
7958 5' -54.9 NC_001973.1 + 13362 0.67 0.90276
Target:  5'- uGCGUGgcGCGCGacggaaCAAcauuuauggccauCGCCGGGCAa -3'
miRNA:   3'- -UGUACuuCGCGUg-----GUU-------------GCGGCUCGUg -5'
7958 5' -54.9 NC_001973.1 + 15999 0.66 0.921448
Target:  5'- ----uGAGCGCGCCgGACGaCCGAugGCGCc -3'
miRNA:   3'- uguacUUCGCGUGG-UUGC-GGCU--CGUG- -5'
7958 5' -54.9 NC_001973.1 + 17941 0.68 0.868554
Target:  5'- gGCGUGAcGCGCGCguucUGCUGGGCAg -3'
miRNA:   3'- -UGUACUuCGCGUGguu-GCGGCUCGUg -5'
7958 5' -54.9 NC_001973.1 + 18284 0.69 0.801807
Target:  5'- ---cGAGG-GCACCAGCGCCacgcuuucGAGCAg -3'
miRNA:   3'- uguaCUUCgCGUGGUUGCGG--------CUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.