miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7959 5' -64.9 NC_001973.1 + 137198 0.66 0.536396
Target:  5'- aCUCGCG-GCGCGagUCGCg-CGGCGGCg -3'
miRNA:   3'- -GAGCGCaCGCGCg-GGUGggGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 81780 0.66 0.536396
Target:  5'- gUCGCGcucgGCGCgaaagugcacgGCCgcgguguccggCGCCgCCGGCGGCg -3'
miRNA:   3'- gAGCGCa---CGCG-----------CGG-----------GUGG-GGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 31352 0.66 0.536396
Target:  5'- -cCGCGcucUGCGUGgUCGCCgCGGCGGu -3'
miRNA:   3'- gaGCGC---ACGCGCgGGUGGgGCCGCUg -5'
7959 5' -64.9 NC_001973.1 + 111930 0.66 0.536396
Target:  5'- -aCGUgGUGCGCGgCgGCgacuucuccgaCCCGGCGGCc -3'
miRNA:   3'- gaGCG-CACGCGCgGgUG-----------GGGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 5676 0.66 0.517928
Target:  5'- uUCGCGU-CGCuGCCCGCCCgCuuucGCGAg -3'
miRNA:   3'- gAGCGCAcGCG-CGGGUGGG-Gc---CGCUg -5'
7959 5' -64.9 NC_001973.1 + 81635 0.66 0.527132
Target:  5'- uCUUG-GUcGCGCGCgCCGCUUCGGcCGGCc -3'
miRNA:   3'- -GAGCgCA-CGCGCG-GGUGGGGCC-GCUG- -5'
7959 5' -64.9 NC_001973.1 + 16901 0.66 0.527132
Target:  5'- uUCGCGccgGCgGCGgCgGCCUcuCGGCGGCg -3'
miRNA:   3'- gAGCGCa--CG-CGCgGgUGGG--GCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 80160 0.66 0.527132
Target:  5'- aCUCGCGauaguaGCGCaGCaUCugCUCGGCGAg -3'
miRNA:   3'- -GAGCGCa-----CGCG-CG-GGugGGGCCGCUg -5'
7959 5' -64.9 NC_001973.1 + 118472 0.66 0.527132
Target:  5'- gUCGuCG-GCGCGuCCCAacuaCgUGGCGGCg -3'
miRNA:   3'- gAGC-GCaCGCGC-GGGUg---GgGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 39421 0.66 0.527132
Target:  5'- -cCGCGgugagGCGCGUCgCGUCCagGGCGACg -3'
miRNA:   3'- gaGCGCa----CGCGCGG-GUGGGg-CCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 44984 0.67 0.455518
Target:  5'- -cCGgGUGCGCGUaguUCACCuuGGUGcACa -3'
miRNA:   3'- gaGCgCACGCGCG---GGUGGggCCGC-UG- -5'
7959 5' -64.9 NC_001973.1 + 22972 0.67 0.455518
Target:  5'- -gCGCGgcgGCGCGCCgACgCCGacgcCGACg -3'
miRNA:   3'- gaGCGCa--CGCGCGGgUGgGGCc---GCUG- -5'
7959 5' -64.9 NC_001973.1 + 58623 0.67 0.455518
Target:  5'- -aCGUGUGCcugaagacGCGCUUcgACgCCGGCGGCg -3'
miRNA:   3'- gaGCGCACG--------CGCGGG--UGgGGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 68700 0.67 0.464192
Target:  5'- gCUCGCGgaauugaaccUGCGCGCUUuCCagCCGcGCGACu -3'
miRNA:   3'- -GAGCGC----------ACGCGCGGGuGG--GGC-CGCUG- -5'
7959 5' -64.9 NC_001973.1 + 121529 0.67 0.464192
Target:  5'- -cCGCcaGCuuGCCCACCaCCGaGCGGCg -3'
miRNA:   3'- gaGCGcaCGcgCGGGUGG-GGC-CGCUG- -5'
7959 5' -64.9 NC_001973.1 + 94300 0.67 0.472953
Target:  5'- --gGCG-GCGCGCCCGCCaUCGaGCagGGCa -3'
miRNA:   3'- gagCGCaCGCGCGGGUGG-GGC-CG--CUG- -5'
7959 5' -64.9 NC_001973.1 + 95735 0.67 0.498814
Target:  5'- uUgGCGcaggGCGCGCCCGCCgacaagaucgugcUCGGCGu- -3'
miRNA:   3'- gAgCGCa---CGCGCGGGUGG-------------GGCCGCug -5'
7959 5' -64.9 NC_001973.1 + 16981 0.67 0.499717
Target:  5'- gUCGUGgcgGcCGCGCCCGCCaUCGGauacugcacCGACu -3'
miRNA:   3'- gAGCGCa--C-GCGCGGGUGG-GGCC---------GCUG- -5'
7959 5' -64.9 NC_001973.1 + 112823 0.67 0.499717
Target:  5'- gUCGUGUGCGUGaucaUgACCCgGGCGcccGCg -3'
miRNA:   3'- gAGCGCACGCGCg---GgUGGGgCCGC---UG- -5'
7959 5' -64.9 NC_001973.1 + 158925 0.67 0.454655
Target:  5'- gUCGCGccGCGCGCgaccgagCCGCCCgCGuccGCGACc -3'
miRNA:   3'- gAGCGCa-CGCGCG-------GGUGGG-GC---CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.