miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7959 5' -64.9 NC_001973.1 + 93723 0.66 0.515179
Target:  5'- -cCGCGaaGCGCuaCCGCgacgaggcgagccgCCCGGCGACc -3'
miRNA:   3'- gaGCGCa-CGCGcgGGUG--------------GGGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 124201 0.66 0.508788
Target:  5'- gUCGCGgcgGCGCGCCgGCUC--GUGACc -3'
miRNA:   3'- gAGCGCa--CGCGCGGgUGGGgcCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 83044 0.66 0.508788
Target:  5'- --gGCG-GCGCGCCCgucgaGCCCgCGGCc-- -3'
miRNA:   3'- gagCGCaCGCGCGGG-----UGGG-GCCGcug -5'
7959 5' -64.9 NC_001973.1 + 3772 0.66 0.508788
Target:  5'- -cCGCGcGCGCGCCCcguCCaCGGCcGCc -3'
miRNA:   3'- gaGCGCaCGCGCGGGu--GGgGCCGcUG- -5'
7959 5' -64.9 NC_001973.1 + 18355 0.66 0.508788
Target:  5'- gCUUGCGUGCcauucGCGCgCAaaaCUCGGcCGGCg -3'
miRNA:   3'- -GAGCGCACG-----CGCGgGUg--GGGCC-GCUG- -5'
7959 5' -64.9 NC_001973.1 + 58999 0.66 0.508788
Target:  5'- aUCGCGcagGCgagcgGCGCCgACguguucuuuUCCGGCGACg -3'
miRNA:   3'- gAGCGCa--CG-----CGCGGgUG---------GGGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 96061 0.66 0.508788
Target:  5'- uUCGCGUGggagauCGaCGCCgACaaCGGCGACc -3'
miRNA:   3'- gAGCGCAC------GC-GCGGgUGggGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 134005 0.66 0.508788
Target:  5'- gCUCGCGUccacgGUGCCCGUCUCGGUGAa -3'
miRNA:   3'- -GAGCGCAcg---CGCGGGUGGGGCCGCUg -5'
7959 5' -64.9 NC_001973.1 + 158341 0.66 0.508788
Target:  5'- gCUCGUcaaccCGCGCCCGCgCCGGCu-- -3'
miRNA:   3'- -GAGCGcac--GCGCGGGUGgGGCCGcug -5'
7959 5' -64.9 NC_001973.1 + 94515 0.66 0.508788
Target:  5'- aUCGCGacCGcCGCCC-CgCCCGGCG-Cg -3'
miRNA:   3'- gAGCGCacGC-GCGGGuG-GGGCCGCuG- -5'
7959 5' -64.9 NC_001973.1 + 16981 0.67 0.499717
Target:  5'- gUCGUGgcgGcCGCGCCCGCCaUCGGauacugcacCGACu -3'
miRNA:   3'- gAGCGCa--C-GCGCGGGUGG-GGCC---------GCUG- -5'
7959 5' -64.9 NC_001973.1 + 112823 0.67 0.499717
Target:  5'- gUCGUGUGCGUGaucaUgACCCgGGCGcccGCg -3'
miRNA:   3'- gAGCGCACGCGCg---GgUGGGgCCGC---UG- -5'
7959 5' -64.9 NC_001973.1 + 9117 0.67 0.499717
Target:  5'- -cCGCGU-UGCGCUCGCacaCGGCGAUg -3'
miRNA:   3'- gaGCGCAcGCGCGGGUGgg-GCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 95735 0.67 0.498814
Target:  5'- uUgGCGcaggGCGCGCCCGCCgacaagaucgugcUCGGCGu- -3'
miRNA:   3'- gAgCGCa---CGCGCGGGUGG-------------GGCCGCug -5'
7959 5' -64.9 NC_001973.1 + 94300 0.67 0.472953
Target:  5'- --gGCG-GCGCGCCCGCCaUCGaGCagGGCa -3'
miRNA:   3'- gagCGCaCGCGCGGGUGG-GGC-CG--CUG- -5'
7959 5' -64.9 NC_001973.1 + 121529 0.67 0.464192
Target:  5'- -cCGCcaGCuuGCCCACCaCCGaGCGGCg -3'
miRNA:   3'- gaGCGcaCGcgCGGGUGG-GGC-CGCUG- -5'
7959 5' -64.9 NC_001973.1 + 68700 0.67 0.464192
Target:  5'- gCUCGCGgaauugaaccUGCGCGCUUuCCagCCGcGCGACu -3'
miRNA:   3'- -GAGCGC----------ACGCGCGGGuGG--GGC-CGCUG- -5'
7959 5' -64.9 NC_001973.1 + 58623 0.67 0.455518
Target:  5'- -aCGUGUGCcugaagacGCGCUUcgACgCCGGCGGCg -3'
miRNA:   3'- gaGCGCACG--------CGCGGG--UGgGGCCGCUG- -5'
7959 5' -64.9 NC_001973.1 + 22972 0.67 0.455518
Target:  5'- -gCGCGgcgGCGCGCCgACgCCGacgcCGACg -3'
miRNA:   3'- gaGCGCa--CGCGCGGgUGgGGCc---GCUG- -5'
7959 5' -64.9 NC_001973.1 + 44984 0.67 0.455518
Target:  5'- -cCGgGUGCGCGUaguUCACCuuGGUGcACa -3'
miRNA:   3'- gaGCgCACGCGCG---GGUGGggCCGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.