miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
796 5' -51.2 NC_000855.1 + 479 0.66 0.455991
Target:  5'- cGAGGCGGGAAucauGAUgCCCAugAg-- -3'
miRNA:   3'- cCUUCGUCCUUu---CUAgGGGUugUggu -5'
796 5' -51.2 NC_000855.1 + 6437 0.66 0.422131
Target:  5'- aGGAgaaugaagacAGCGuGGAAAagguGAUCCUCAAgGCCGa -3'
miRNA:   3'- -CCU----------UCGU-CCUUU----CUAGGGGUUgUGGU- -5'
796 5' -51.2 NC_000855.1 + 2000 0.68 0.349355
Target:  5'- -cAAGCuGG-AAGAUCCCCuuGCACUc -3'
miRNA:   3'- ccUUCGuCCuUUCUAGGGGu-UGUGGu -5'
796 5' -51.2 NC_000855.1 + 4938 0.69 0.311965
Target:  5'- gGGAGGUucAGGAGGGGagCCCAGaGCCu -3'
miRNA:   3'- -CCUUCG--UCCUUUCUagGGGUUgUGGu -5'
796 5' -51.2 NC_000855.1 + 7726 0.73 0.159557
Target:  5'- uGGggGUGGGAAAGGggagcaUCCCCAGaGCUg -3'
miRNA:   3'- -CCuuCGUCCUUUCU------AGGGGUUgUGGu -5'
796 5' -51.2 NC_000855.1 + 6221 1.12 0.000176
Target:  5'- uGGAAGCAGGAAAGAUCCCCAACACCAa -3'
miRNA:   3'- -CCUUCGUCCUUUCUAGGGGUUGUGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.