miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7961 3' -58.3 NC_001973.1 + 95024 0.66 0.833349
Target:  5'- -gUGCCGAUGUgCGGCGGGGacgGCAu-- -3'
miRNA:   3'- ugGCGGCUGUA-GCCGCUCCg--CGUuau -5'
7961 3' -58.3 NC_001973.1 + 81917 0.66 0.833349
Target:  5'- cACCGCUaucgagauGAUgaaAUCGGCGuccGGCGCGGa- -3'
miRNA:   3'- -UGGCGG--------CUG---UAGCCGCu--CCGCGUUau -5'
7961 3' -58.3 NC_001973.1 + 57932 0.66 0.833349
Target:  5'- cGCCGUacaCGACGUgGGCGAcGGCcCGAa- -3'
miRNA:   3'- -UGGCG---GCUGUAgCCGCU-CCGcGUUau -5'
7961 3' -58.3 NC_001973.1 + 133295 0.66 0.833349
Target:  5'- cGCgGCCGGCggCGGCGccgucGCGCGGc- -3'
miRNA:   3'- -UGgCGGCUGuaGCCGCuc---CGCGUUau -5'
7961 3' -58.3 NC_001973.1 + 10806 0.66 0.833349
Target:  5'- -gCGCCGACggCGGCGAGaauCGCc--- -3'
miRNA:   3'- ugGCGGCUGuaGCCGCUCc--GCGuuau -5'
7961 3' -58.3 NC_001973.1 + 85248 0.66 0.825047
Target:  5'- aGCgGUCGACuUUGGagaGGGGCGCGu-- -3'
miRNA:   3'- -UGgCGGCUGuAGCCg--CUCCGCGUuau -5'
7961 3' -58.3 NC_001973.1 + 52171 0.66 0.825047
Target:  5'- cGCCGUacuuggCGACGagcgCGGCGGGGuCGCGc-- -3'
miRNA:   3'- -UGGCG------GCUGUa---GCCGCUCC-GCGUuau -5'
7961 3' -58.3 NC_001973.1 + 56361 0.66 0.825047
Target:  5'- gGCC-CCGAC-UCGGCGccGCGCu--- -3'
miRNA:   3'- -UGGcGGCUGuAGCCGCucCGCGuuau -5'
7961 3' -58.3 NC_001973.1 + 120497 0.66 0.825047
Target:  5'- cAUCGCCGAgcggcaccuuuUGUCGGaCGAGGCucGCGAc- -3'
miRNA:   3'- -UGGCGGCU-----------GUAGCC-GCUCCG--CGUUau -5'
7961 3' -58.3 NC_001973.1 + 38827 0.66 0.825047
Target:  5'- gACUcCCGGCGgaggcggcggCGGCGAGGgCGCGGg- -3'
miRNA:   3'- -UGGcGGCUGUa---------GCCGCUCC-GCGUUau -5'
7961 3' -58.3 NC_001973.1 + 158630 0.66 0.819982
Target:  5'- cGCCGcCCGGCGcgcccgacgacccguUCGGCGAGaucGgGCAAg- -3'
miRNA:   3'- -UGGC-GGCUGU---------------AGCCGCUC---CgCGUUau -5'
7961 3' -58.3 NC_001973.1 + 158721 0.66 0.816573
Target:  5'- uUCGCCGAgAUCaGGCGAGGaguccaGCu--- -3'
miRNA:   3'- uGGCGGCUgUAG-CCGCUCCg-----CGuuau -5'
7961 3' -58.3 NC_001973.1 + 135924 0.66 0.816573
Target:  5'- cGCagaGCgGGCG-CGGCGAuGGCGCGc-- -3'
miRNA:   3'- -UGg--CGgCUGUaGCCGCU-CCGCGUuau -5'
7961 3' -58.3 NC_001973.1 + 88675 0.66 0.816573
Target:  5'- uGCCGUCGGCccucagcauGUCGGCGAacacGCGCu--- -3'
miRNA:   3'- -UGGCGGCUG---------UAGCCGCUc---CGCGuuau -5'
7961 3' -58.3 NC_001973.1 + 86518 0.66 0.816573
Target:  5'- uCCGCCGACc-UGGCGccgccGGCGCGc-- -3'
miRNA:   3'- uGGCGGCUGuaGCCGCu----CCGCGUuau -5'
7961 3' -58.3 NC_001973.1 + 55835 0.66 0.816573
Target:  5'- uGCgGaCCGGCGagGGCGAGcGCGCc--- -3'
miRNA:   3'- -UGgC-GGCUGUagCCGCUC-CGCGuuau -5'
7961 3' -58.3 NC_001973.1 + 35138 0.66 0.808806
Target:  5'- uCCGCCGGCGacaggccccgcuugaUGGCGAcgcuGGCGCGAc- -3'
miRNA:   3'- uGGCGGCUGUa--------------GCCGCU----CCGCGUUau -5'
7961 3' -58.3 NC_001973.1 + 77301 0.66 0.807935
Target:  5'- cGCCGCCGAgA-CGG-GcGGCGCGGc- -3'
miRNA:   3'- -UGGCGGCUgUaGCCgCuCCGCGUUau -5'
7961 3' -58.3 NC_001973.1 + 7441 0.66 0.807935
Target:  5'- cUCGCaCGugAgcUCGGCGGugcGGCGCGAc- -3'
miRNA:   3'- uGGCG-GCugU--AGCCGCU---CCGCGUUau -5'
7961 3' -58.3 NC_001973.1 + 139046 0.66 0.799141
Target:  5'- uGCCGCgGAaGUCGGCGAaGUGCc--- -3'
miRNA:   3'- -UGGCGgCUgUAGCCGCUcCGCGuuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.