miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7962 3' -58.2 NC_001973.1 + 101200 0.66 0.845888
Target:  5'- cGAAaUugGcGCGCGGGCgGCGCUucuggucgCGCCa -3'
miRNA:   3'- -CUUcAugC-UGUGCCCG-CGCGA--------GCGGa -5'
7962 3' -58.2 NC_001973.1 + 24295 0.66 0.845888
Target:  5'- cGAAuggGCGAcCACGGcGCGCGUcgaCGCCg -3'
miRNA:   3'- -CUUca-UGCU-GUGCC-CGCGCGa--GCGGa -5'
7962 3' -58.2 NC_001973.1 + 53576 0.66 0.837917
Target:  5'- ---cUGCGAC-UGaGGCGCGCgccggCGCCg -3'
miRNA:   3'- cuucAUGCUGuGC-CCGCGCGa----GCGGa -5'
7962 3' -58.2 NC_001973.1 + 6210 0.66 0.837917
Target:  5'- ----gGCGGCGCGGuGCcgGCGCggCGCCc -3'
miRNA:   3'- cuucaUGCUGUGCC-CG--CGCGa-GCGGa -5'
7962 3' -58.2 NC_001973.1 + 55226 0.66 0.837917
Target:  5'- cGGAGgcgGCGGCgGCGGGCG-GCgagagGCCUg -3'
miRNA:   3'- -CUUCa--UGCUG-UGCCCGCgCGag---CGGA- -5'
7962 3' -58.2 NC_001973.1 + 77363 0.66 0.837917
Target:  5'- -----cCGACGCGGccGCGCGCccgcgCGCCg -3'
miRNA:   3'- cuucauGCUGUGCC--CGCGCGa----GCGGa -5'
7962 3' -58.2 NC_001973.1 + 82923 0.66 0.837917
Target:  5'- -----cCGACGCGuucGGCGCGCcgaUCGCCc -3'
miRNA:   3'- cuucauGCUGUGC---CCGCGCG---AGCGGa -5'
7962 3' -58.2 NC_001973.1 + 109158 0.66 0.837917
Target:  5'- cGAGccggGCGAgcCGGucgcccGCGCGCUCGCCg -3'
miRNA:   3'- cUUCa---UGCUguGCC------CGCGCGAGCGGa -5'
7962 3' -58.2 NC_001973.1 + 95957 0.66 0.833048
Target:  5'- --cGUACgcuuucgacgaGACgGCGGGCGCGCUgguguccuucgacagCGCCg -3'
miRNA:   3'- cuuCAUG-----------CUG-UGCCCGCGCGA---------------GCGGa -5'
7962 3' -58.2 NC_001973.1 + 4205 0.66 0.829766
Target:  5'- gGAGGUGCaugcGCugGaaGGCGCGCcUGCCg -3'
miRNA:   3'- -CUUCAUGc---UGugC--CCGCGCGaGCGGa -5'
7962 3' -58.2 NC_001973.1 + 25999 0.66 0.829766
Target:  5'- ----gGCGACACGGGCcucuuuaugaGCUCGCa- -3'
miRNA:   3'- cuucaUGCUGUGCCCGcg--------CGAGCGga -5'
7962 3' -58.2 NC_001973.1 + 21569 0.66 0.829766
Target:  5'- ----gGCG-CGCGGGguugaaGUGCUCGCCg -3'
miRNA:   3'- cuucaUGCuGUGCCCg-----CGCGAGCGGa -5'
7962 3' -58.2 NC_001973.1 + 61677 0.66 0.829766
Target:  5'- -cAGUcGCGGCGCGaagcggcgucGGCGCGCUCGa-- -3'
miRNA:   3'- cuUCA-UGCUGUGC----------CCGCGCGAGCgga -5'
7962 3' -58.2 NC_001973.1 + 98258 0.66 0.829766
Target:  5'- ----cGCGGCGCuGGuCGCGUUCGCUc -3'
miRNA:   3'- cuucaUGCUGUGcCC-GCGCGAGCGGa -5'
7962 3' -58.2 NC_001973.1 + 50084 0.66 0.829766
Target:  5'- cGAGGggcgGCGGCGCcacggaGGGCggcgGCGC-CGCCg -3'
miRNA:   3'- -CUUCa---UGCUGUG------CCCG----CGCGaGCGGa -5'
7962 3' -58.2 NC_001973.1 + 40213 0.66 0.821441
Target:  5'- cAGGUGCGACGCGaucaGCGCGUaguccacgaaCGCCUc -3'
miRNA:   3'- cUUCAUGCUGUGCc---CGCGCGa---------GCGGA- -5'
7962 3' -58.2 NC_001973.1 + 95569 0.66 0.821441
Target:  5'- --cGUG-GACuACGGGCGCGCgcacCGCUc -3'
miRNA:   3'- cuuCAUgCUG-UGCCCGCGCGa---GCGGa -5'
7962 3' -58.2 NC_001973.1 + 62330 0.66 0.821441
Target:  5'- --cGUACcaaACGCGGGUGCaGUccuUCGCCUg -3'
miRNA:   3'- cuuCAUGc--UGUGCCCGCG-CG---AGCGGA- -5'
7962 3' -58.2 NC_001973.1 + 80569 0.66 0.812951
Target:  5'- -cAGUAUG-CGCGGGuCGuCGCUCaugGCCUc -3'
miRNA:   3'- cuUCAUGCuGUGCCC-GC-GCGAG---CGGA- -5'
7962 3' -58.2 NC_001973.1 + 68412 0.66 0.812951
Target:  5'- --cGUGCG-Cuc-GGCGCGCUCGUCg -3'
miRNA:   3'- cuuCAUGCuGugcCCGCGCGAGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.