miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7962 5' -54.9 NC_001973.1 + 36917 0.66 0.953055
Target:  5'- uCGAagcGGUGacGUGCGCCGCAauUCGAuccUGCa -3'
miRNA:   3'- -GCU---UCAC--CACGCGGUGU--AGCUc--ACGc -5'
7962 5' -54.9 NC_001973.1 + 90324 0.66 0.952654
Target:  5'- gCGAGGcGGUGCGCCcgaucuuguauauGCGUCGAucucgauacuGggGCGa -3'
miRNA:   3'- -GCUUCaCCACGCGG-------------UGUAGCU----------Ca-CGC- -5'
7962 5' -54.9 NC_001973.1 + 65955 0.66 0.951846
Target:  5'- aGGcuGGUGGUcgcGCGCCACGacgacgaccucaacUCGuggcuGGUGCGa -3'
miRNA:   3'- gCU--UCACCA---CGCGGUGU--------------AGC-----UCACGC- -5'
7962 5' -54.9 NC_001973.1 + 111082 0.66 0.948945
Target:  5'- cCGAcGUGG---GCCGCGUCGAGgagaGCGa -3'
miRNA:   3'- -GCUuCACCacgCGGUGUAGCUCa---CGC- -5'
7962 5' -54.9 NC_001973.1 + 135856 0.66 0.944603
Target:  5'- uGGAGcgaGGUGUGC---GUCGGGUGCGu -3'
miRNA:   3'- gCUUCa--CCACGCGgugUAGCUCACGC- -5'
7962 5' -54.9 NC_001973.1 + 133380 0.67 0.93016
Target:  5'- aCGAGuuUGGUGCG-CGCGUCGA-UGCGc -3'
miRNA:   3'- -GCUUc-ACCACGCgGUGUAGCUcACGC- -5'
7962 5' -54.9 NC_001973.1 + 39068 0.67 0.93016
Target:  5'- gCGAGGUcGGUGgGCgGCAUUGcGUcaGCGg -3'
miRNA:   3'- -GCUUCA-CCACgCGgUGUAGCuCA--CGC- -5'
7962 5' -54.9 NC_001973.1 + 44965 0.67 0.901323
Target:  5'- uCGAAGU--UGgGCCGCAcgucCGGGUGCGc -3'
miRNA:   3'- -GCUUCAccACgCGGUGUa---GCUCACGC- -5'
7962 5' -54.9 NC_001973.1 + 50269 0.68 0.894849
Target:  5'- aCGAuGUGGcUGCGgCACAUgCGGaUGCGg -3'
miRNA:   3'- -GCUuCACC-ACGCgGUGUA-GCUcACGC- -5'
7962 5' -54.9 NC_001973.1 + 109628 0.68 0.881216
Target:  5'- aCGGAcGUGGUGCGCgACuUCGAc-GCGc -3'
miRNA:   3'- -GCUU-CACCACGCGgUGuAGCUcaCGC- -5'
7962 5' -54.9 NC_001973.1 + 6335 0.71 0.763819
Target:  5'- -------aUGCGCCGCGUCGuGUGCGg -3'
miRNA:   3'- gcuucaccACGCGGUGUAGCuCACGC- -5'
7962 5' -54.9 NC_001973.1 + 83040 0.71 0.754279
Target:  5'- gCGAGGcGGcGCGCC-CGUCGAGcccGCGg -3'
miRNA:   3'- -GCUUCaCCaCGCGGuGUAGCUCa--CGC- -5'
7962 5' -54.9 NC_001973.1 + 94922 0.71 0.734886
Target:  5'- -aAGGUGGUGgcCGCCuacuuCGUCGAGUGgGg -3'
miRNA:   3'- gcUUCACCAC--GCGGu----GUAGCUCACgC- -5'
7962 5' -54.9 NC_001973.1 + 74796 0.72 0.664677
Target:  5'- cCGggGUGG-GCGCgCACG-CGAG-GCGc -3'
miRNA:   3'- -GCuuCACCaCGCG-GUGUaGCUCaCGC- -5'
7962 5' -54.9 NC_001973.1 + 110582 0.73 0.623782
Target:  5'- aCGAGGUGGUGCGCauCACGaaCGAGaccaUGCGc -3'
miRNA:   3'- -GCUUCACCACGCG--GUGUa-GCUC----ACGC- -5'
7962 5' -54.9 NC_001973.1 + 67615 0.74 0.593147
Target:  5'- gCGGAGcUGGUGCcgGCCGCGUCcGAGaGCGu -3'
miRNA:   3'- -GCUUC-ACCACG--CGGUGUAG-CUCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.