miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7967 3' -60.3 NC_001973.1 + 23268 0.68 0.638486
Target:  5'- cGCCGCGcgcgcuuGCCCGGCggCGGCG-GUAAa- -3'
miRNA:   3'- aCGGCGC-------UGGGCCG--GCUGCgCAUUcu -5'
7967 3' -60.3 NC_001973.1 + 84054 0.68 0.629628
Target:  5'- aGCCGaGGCgCaGGCCGACGCGa---- -3'
miRNA:   3'- aCGGCgCUGgG-CCGGCUGCGCauucu -5'
7967 3' -60.3 NC_001973.1 + 114800 0.68 0.619787
Target:  5'- uUGaCCuccauCGACCCuaaCCGACGCGUAAGAu -3'
miRNA:   3'- -AC-GGc----GCUGGGcc-GGCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 6937 0.68 0.619787
Target:  5'- cGCUGCG-CCUGGaCCGGCGCa----- -3'
miRNA:   3'- aCGGCGCuGGGCC-GGCUGCGcauucu -5'
7967 3' -60.3 NC_001973.1 + 38629 0.68 0.619787
Target:  5'- cUGUCgGCGACaCCGGCCGugcuCGCGg---- -3'
miRNA:   3'- -ACGG-CGCUG-GGCCGGCu---GCGCauucu -5'
7967 3' -60.3 NC_001973.1 + 121358 0.68 0.609956
Target:  5'- cGUgCGCGACCUcgaccaucugGGCCGACGCGc---- -3'
miRNA:   3'- aCG-GCGCUGGG----------CCGGCUGCGCauucu -5'
7967 3' -60.3 NC_001973.1 + 9397 0.68 0.609956
Target:  5'- gGUCGCGAUCCGGCCGuCgGCa----- -3'
miRNA:   3'- aCGGCGCUGGGCCGGCuG-CGcauucu -5'
7967 3' -60.3 NC_001973.1 + 94411 0.69 0.60014
Target:  5'- cGCgGCGccGCCCGGaCCGGCgGCGUuGGc -3'
miRNA:   3'- aCGgCGC--UGGGCC-GGCUG-CGCAuUCu -5'
7967 3' -60.3 NC_001973.1 + 62925 0.69 0.60014
Target:  5'- cGCCGauuCGACUCgGGCCGGCGuCGUcaguAGAc -3'
miRNA:   3'- aCGGC---GCUGGG-CCGGCUGC-GCAu---UCU- -5'
7967 3' -60.3 NC_001973.1 + 32573 0.69 0.60014
Target:  5'- cGCCGuCGGCUCGGCgCGcugcgacacggACGCGaAGGAu -3'
miRNA:   3'- aCGGC-GCUGGGCCG-GC-----------UGCGCaUUCU- -5'
7967 3' -60.3 NC_001973.1 + 150200 0.69 0.599159
Target:  5'- gGCCGCGGCUCGGCCucGGCuugcuggGCGgccuccAAGAu -3'
miRNA:   3'- aCGGCGCUGGGCCGG--CUG-------CGCa-----UUCU- -5'
7967 3' -60.3 NC_001973.1 + 27860 0.69 0.590345
Target:  5'- cGCUgGCGGCCgCGGCCGcggGCGCGg---- -3'
miRNA:   3'- aCGG-CGCUGG-GCCGGC---UGCGCauucu -5'
7967 3' -60.3 NC_001973.1 + 111941 0.69 0.580579
Target:  5'- gGCgGCGACUucuccgacccggCGGCCGAgCGCGUGc-- -3'
miRNA:   3'- aCGgCGCUGG------------GCCGGCU-GCGCAUucu -5'
7967 3' -60.3 NC_001973.1 + 7929 0.69 0.580579
Target:  5'- aGCgCGUGugCgCGGCCGGCGUGg---- -3'
miRNA:   3'- aCG-GCGCugG-GCCGGCUGCGCauucu -5'
7967 3' -60.3 NC_001973.1 + 2626 0.69 0.580579
Target:  5'- cGCCG--GCCgCGGCCGAU-CGUGAGAu -3'
miRNA:   3'- aCGGCgcUGG-GCCGGCUGcGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 45998 0.69 0.580579
Target:  5'- gUGCCGCGAU---GCCGGCGCGcGAGc -3'
miRNA:   3'- -ACGGCGCUGggcCGGCUGCGCaUUCu -5'
7967 3' -60.3 NC_001973.1 + 126817 0.69 0.570846
Target:  5'- cGCCGCuaGugUccauuuuaaCGGCCGGCGCGUAc-- -3'
miRNA:   3'- aCGGCG--CugG---------GCCGGCUGCGCAUucu -5'
7967 3' -60.3 NC_001973.1 + 72120 0.69 0.570846
Target:  5'- -cUCGa-GCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- acGGCgcUGGGCCGgCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 46106 0.69 0.561154
Target:  5'- gGCCGCGuGCCCGcGCUGgACGCGc---- -3'
miRNA:   3'- aCGGCGC-UGGGC-CGGC-UGCGCauucu -5'
7967 3' -60.3 NC_001973.1 + 151343 0.69 0.561154
Target:  5'- gGUCagauuCGAgCUCGGCgGACGCGUAGGAu -3'
miRNA:   3'- aCGGc----GCU-GGGCCGgCUGCGCAUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.