miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7986 3' -50.6 NC_001973.1 + 97281 0.66 0.997833
Target:  5'- gCCGGCGAGGGC-UUCuacaauUGCGccGACg -3'
miRNA:   3'- -GGCUGCUCCUGuAAGcu----AUGCacCUG- -5'
7986 3' -50.6 NC_001973.1 + 79245 0.66 0.997833
Target:  5'- gCC-ACGugauGGAguUgcugcagCGGUACGUGGACg -3'
miRNA:   3'- -GGcUGCu---CCUguAa------GCUAUGCACCUG- -5'
7986 3' -50.6 NC_001973.1 + 140831 0.66 0.997796
Target:  5'- -gGGCGGcGGGCuaccuGUUCGAcgacgcgUACGUGGAUu -3'
miRNA:   3'- ggCUGCU-CCUG-----UAAGCU-------AUGCACCUG- -5'
7986 3' -50.6 NC_001973.1 + 48574 0.66 0.99743
Target:  5'- gCCGACGAcGACcagaugCGGUACGUGcuGCa -3'
miRNA:   3'- -GGCUGCUcCUGuaa---GCUAUGCACc-UG- -5'
7986 3' -50.6 NC_001973.1 + 155959 0.66 0.996965
Target:  5'- uCCGcCGAGGugGUggaCGAcgAgGUGGAg -3'
miRNA:   3'- -GGCuGCUCCugUAa--GCUa-UgCACCUg -5'
7986 3' -50.6 NC_001973.1 + 94114 0.66 0.995827
Target:  5'- gCCGuggcCGAGGACAUUCuGAacaagcucgACGcGGACc -3'
miRNA:   3'- -GGCu---GCUCCUGUAAG-CUa--------UGCaCCUG- -5'
7986 3' -50.6 NC_001973.1 + 124800 0.67 0.99514
Target:  5'- gCCGGCGAGGGCcggggccUCGAUc---GGACg -3'
miRNA:   3'- -GGCUGCUCCUGua-----AGCUAugcaCCUG- -5'
7986 3' -50.6 NC_001973.1 + 83080 0.67 0.99514
Target:  5'- uCCGGCGAGcGGCGgcggcgccgUCGcgcucAUGCaaGUGGACg -3'
miRNA:   3'- -GGCUGCUC-CUGUa--------AGC-----UAUG--CACCUG- -5'
7986 3' -50.6 NC_001973.1 + 118068 0.67 0.994362
Target:  5'- gCCGGCGuc-ACGUacacguacUCGAuaUACGUGGGCg -3'
miRNA:   3'- -GGCUGCuccUGUA--------AGCU--AUGCACCUG- -5'
7986 3' -50.6 NC_001973.1 + 6260 0.67 0.994111
Target:  5'- uUCGGCGuGGACGUucgcgugaaaacgcUCGAguuCGUGG-Cg -3'
miRNA:   3'- -GGCUGCuCCUGUA--------------AGCUau-GCACCuG- -5'
7986 3' -50.6 NC_001973.1 + 56017 0.67 0.994025
Target:  5'- gCGACGAGGAggauguCAUcucUCGGUccgagaagcgcucCGUGGACa -3'
miRNA:   3'- gGCUGCUCCU------GUA---AGCUAu------------GCACCUG- -5'
7986 3' -50.6 NC_001973.1 + 64268 0.67 0.993488
Target:  5'- uUCGGCGAGGcGCAcUCGGaaUGCaaacUGGACa -3'
miRNA:   3'- -GGCUGCUCC-UGUaAGCU--AUGc---ACCUG- -5'
7986 3' -50.6 NC_001973.1 + 78600 0.67 0.993488
Target:  5'- -aGACGAGGACGa-CGAgucCGcGGACg -3'
miRNA:   3'- ggCUGCUCCUGUaaGCUau-GCaCCUG- -5'
7986 3' -50.6 NC_001973.1 + 42327 0.67 0.991414
Target:  5'- aCGACGAGGACua-CGAggaggAgGaGGACg -3'
miRNA:   3'- gGCUGCUCCUGuaaGCUa----UgCaCCUG- -5'
7986 3' -50.6 NC_001973.1 + 59513 0.68 0.990198
Target:  5'- gCCGACauucAGGACAaccaagagaCGAUGCGcuUGGACg -3'
miRNA:   3'- -GGCUGc---UCCUGUaa-------GCUAUGC--ACCUG- -5'
7986 3' -50.6 NC_001973.1 + 57236 0.68 0.98885
Target:  5'- gCCGACgcgGAGGACAgcgauUUCGccgGCGcuuUGGGCa -3'
miRNA:   3'- -GGCUG---CUCCUGU-----AAGCua-UGC---ACCUG- -5'
7986 3' -50.6 NC_001973.1 + 62692 0.68 0.987363
Target:  5'- aCCGACGAGGGCgg-CGAcgACGUcGcGAa -3'
miRNA:   3'- -GGCUGCUCCUGuaaGCUa-UGCA-C-CUg -5'
7986 3' -50.6 NC_001973.1 + 117552 0.68 0.985727
Target:  5'- uCCGACGcGGACGa-CGAcUGCGagUGGGCg -3'
miRNA:   3'- -GGCUGCuCCUGUaaGCU-AUGC--ACCUG- -5'
7986 3' -50.6 NC_001973.1 + 45834 0.68 0.985727
Target:  5'- gCCGGCGcGG-CGUUCGuggGCcUGGGCg -3'
miRNA:   3'- -GGCUGCuCCuGUAAGCua-UGcACCUG- -5'
7986 3' -50.6 NC_001973.1 + 125267 0.68 0.983934
Target:  5'- aCUGAUGAGGG-AUUUGAaaaagucggGCGUGGAUa -3'
miRNA:   3'- -GGCUGCUCCUgUAAGCUa--------UGCACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.