miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7986 5' -56.5 NC_001973.1 + 106939 0.66 0.91155
Target:  5'- gUGCCCGCGUugaauUUCAGcgcgcCGGgcgcGCUCGg -3'
miRNA:   3'- gACGGGCGCA-----AGGUUa----GCCa---CGAGCa -5'
7986 5' -56.5 NC_001973.1 + 26153 0.66 0.91155
Target:  5'- -aGCCCGCGUgggCCAGUuccgcCGGcGCgggcgCGUc -3'
miRNA:   3'- gaCGGGCGCAa--GGUUA-----GCCaCGa----GCA- -5'
7986 5' -56.5 NC_001973.1 + 149169 0.66 0.909762
Target:  5'- uUGCCCGC--UCCGaaagcuuugaccacGUCGGUcaGCUUGUc -3'
miRNA:   3'- gACGGGCGcaAGGU--------------UAGCCA--CGAGCA- -5'
7986 5' -56.5 NC_001973.1 + 100112 0.66 0.905508
Target:  5'- -cGCUCGCGacguugaccagUCCGAUCaGGUGgUCGa -3'
miRNA:   3'- gaCGGGCGCa----------AGGUUAG-CCACgAGCa -5'
7986 5' -56.5 NC_001973.1 + 38242 0.66 0.886005
Target:  5'- uCUcCCCGCuc-CCAAUCGGcGCUCGc -3'
miRNA:   3'- -GAcGGGCGcaaGGUUAGCCaCGAGCa -5'
7986 5' -56.5 NC_001973.1 + 111272 0.67 0.864514
Target:  5'- gCUGCCCGUGggCaacUCGGUGgUgGUg -3'
miRNA:   3'- -GACGGGCGCaaGguuAGCCACgAgCA- -5'
7986 5' -56.5 NC_001973.1 + 112848 0.67 0.833002
Target:  5'- -cGCCCGCGcacagcgCCAGcUCGG-GCUUGa -3'
miRNA:   3'- gaCGGGCGCaa-----GGUU-AGCCaCGAGCa -5'
7986 5' -56.5 NC_001973.1 + 158441 0.67 0.833002
Target:  5'- -cGCCCGCG-UCCGAgccg-GCUCGUc -3'
miRNA:   3'- gaCGGGCGCaAGGUUagccaCGAGCA- -5'
7986 5' -56.5 NC_001973.1 + 41781 0.68 0.806578
Target:  5'- gCUGCCCgagaacgGCGggcgCgAGUgGGUGCUCGa -3'
miRNA:   3'- -GACGGG-------CGCaa--GgUUAgCCACGAGCa -5'
7986 5' -56.5 NC_001973.1 + 134003 0.69 0.742765
Target:  5'- gUGCUCGCG-UCCA--CGGUGCcCGUc -3'
miRNA:   3'- gACGGGCGCaAGGUuaGCCACGaGCA- -5'
7986 5' -56.5 NC_001973.1 + 47639 0.69 0.742765
Target:  5'- -cGCCCGCGaacgcUUCCAcgCcGUGCUUGa -3'
miRNA:   3'- gaCGGGCGC-----AAGGUuaGcCACGAGCa -5'
7986 5' -56.5 NC_001973.1 + 92784 0.72 0.580166
Target:  5'- aUGUCCGCGgacgaggacgagUCCAAguUCGGUGCUgGg -3'
miRNA:   3'- gACGGGCGCa-----------AGGUU--AGCCACGAgCa -5'
7986 5' -56.5 NC_001973.1 + 31007 0.75 0.438219
Target:  5'- -gGCCCGCGUUCaCGgcGUCGGcGCUCa- -3'
miRNA:   3'- gaCGGGCGCAAG-GU--UAGCCaCGAGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.