miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7988 3' -57.5 NC_001973.1 + 82903 0.66 0.824157
Target:  5'- cGUCGCGcCGCCGcgcccgaccGACGCGuUCGGCGc -3'
miRNA:   3'- uUAGCGUuGCGGU---------CUGCGC-GGUCGUu -5'
7988 3' -57.5 NC_001973.1 + 106693 0.66 0.824157
Target:  5'- cGUCGCuuUGgCGGGCGCGCC-GUAc -3'
miRNA:   3'- uUAGCGuuGCgGUCUGCGCGGuCGUu -5'
7988 3' -57.5 NC_001973.1 + 72870 0.66 0.824157
Target:  5'- -cUCGC-GCGCCu--CGCGCCAcGCGc -3'
miRNA:   3'- uuAGCGuUGCGGucuGCGCGGU-CGUu -5'
7988 3' -57.5 NC_001973.1 + 111073 0.66 0.824157
Target:  5'- --aCGCGGCGCCcGACGUggGCC-GCGu -3'
miRNA:   3'- uuaGCGUUGCGGuCUGCG--CGGuCGUu -5'
7988 3' -57.5 NC_001973.1 + 101561 0.66 0.824157
Target:  5'- --gCGCGugGuCCAGGCGCGCacguuGCu- -3'
miRNA:   3'- uuaGCGUugC-GGUCUGCGCGgu---CGuu -5'
7988 3' -57.5 NC_001973.1 + 28664 0.66 0.824157
Target:  5'- --gCGCGGCGUCGaGCGCGCUgccaaagucGGCGAa -3'
miRNA:   3'- uuaGCGUUGCGGUcUGCGCGG---------UCGUU- -5'
7988 3' -57.5 NC_001973.1 + 8396 0.66 0.824157
Target:  5'- --cCGCAucuacuugGCGCUGGGCGCGaaCGGCAAg -3'
miRNA:   3'- uuaGCGU--------UGCGGUCUGCGCg-GUCGUU- -5'
7988 3' -57.5 NC_001973.1 + 10317 0.66 0.815448
Target:  5'- --gCGCAGCGCagCGGGCGCucguugagGUCGGCGAu -3'
miRNA:   3'- uuaGCGUUGCG--GUCUGCG--------CGGUCGUU- -5'
7988 3' -57.5 NC_001973.1 + 24620 0.66 0.815448
Target:  5'- --gCGCGGCGgCAGGCGCaGUucaaaCAGCAAg -3'
miRNA:   3'- uuaGCGUUGCgGUCUGCG-CG-----GUCGUU- -5'
7988 3' -57.5 NC_001973.1 + 106421 0.66 0.815448
Target:  5'- --gCGCGACGCCGaGCGCGgC-GCAu -3'
miRNA:   3'- uuaGCGUUGCGGUcUGCGCgGuCGUu -5'
7988 3' -57.5 NC_001973.1 + 111488 0.66 0.815448
Target:  5'- cGUCGCcGCGCCGG-CGCGCgA-CAAc -3'
miRNA:   3'- uUAGCGuUGCGGUCuGCGCGgUcGUU- -5'
7988 3' -57.5 NC_001973.1 + 5932 0.66 0.815448
Target:  5'- cGGUCGC-GCGCaCGaugcgcGACGCGgCCGGCGGa -3'
miRNA:   3'- -UUAGCGuUGCG-GU------CUGCGC-GGUCGUU- -5'
7988 3' -57.5 NC_001973.1 + 8063 0.66 0.810141
Target:  5'- cGUCGCGcugGCGCUcGGCGCGCacgcguucccgcugaCGGCGAg -3'
miRNA:   3'- uUAGCGU---UGCGGuCUGCGCG---------------GUCGUU- -5'
7988 3' -57.5 NC_001973.1 + 110837 0.66 0.806569
Target:  5'- cGUCGCGuucaACGaCCGGcccacgguguacGCGUGCCGGCGc -3'
miRNA:   3'- uUAGCGU----UGC-GGUC------------UGCGCGGUCGUu -5'
7988 3' -57.5 NC_001973.1 + 113557 0.66 0.805672
Target:  5'- --gUGCAGCGCCaucagcaGGGCGCuuuugccgguGCCGGCGc -3'
miRNA:   3'- uuaGCGUUGCGG-------UCUGCG----------CGGUCGUu -5'
7988 3' -57.5 NC_001973.1 + 106876 0.66 0.797527
Target:  5'- uAUCGC-GCGCCGGccgaaccguGCGCG-CGGCAAu -3'
miRNA:   3'- uUAGCGuUGCGGUC---------UGCGCgGUCGUU- -5'
7988 3' -57.5 NC_001973.1 + 96730 0.66 0.797527
Target:  5'- uAUCGCAccguguacGCGaaauaCCGGA-GCGCCGGCGAg -3'
miRNA:   3'- uUAGCGU--------UGC-----GGUCUgCGCGGUCGUU- -5'
7988 3' -57.5 NC_001973.1 + 107538 0.66 0.797527
Target:  5'- uGAUCGUGGgGCUucGGGCGCGCCGaCGAc -3'
miRNA:   3'- -UUAGCGUUgCGG--UCUGCGCGGUcGUU- -5'
7988 3' -57.5 NC_001973.1 + 102809 0.66 0.796614
Target:  5'- --gUGCAAgGCCGGcgucaugGCGCGCC-GCAAc -3'
miRNA:   3'- uuaGCGUUgCGGUC-------UGCGCGGuCGUU- -5'
7988 3' -57.5 NC_001973.1 + 56199 0.66 0.796614
Target:  5'- uAGUCGCuuucgucggcgucGGCGCCGGGCGCGau-GCGu -3'
miRNA:   3'- -UUAGCG-------------UUGCGGUCUGCGCgguCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.