miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7988 3' -57.5 NC_001973.1 + 23564 0.66 0.788331
Target:  5'- --cCGCAGCcgGCCggcGGACGCGCCGcccGCGc -3'
miRNA:   3'- uuaGCGUUG--CGG---UCUGCGCGGU---CGUu -5'
7988 3' -57.5 NC_001973.1 + 62675 0.66 0.788331
Target:  5'- --aCGCGACGCC--GCGCGCUaccgacgagggcGGCGAc -3'
miRNA:   3'- uuaGCGUUGCGGucUGCGCGG------------UCGUU- -5'
7988 3' -57.5 NC_001973.1 + 132536 0.66 0.788331
Target:  5'- ---gGC--CGCCGGGCGCGgCGGCGGg -3'
miRNA:   3'- uuagCGuuGCGGUCUGCGCgGUCGUU- -5'
7988 3' -57.5 NC_001973.1 + 92605 0.66 0.788331
Target:  5'- -cUUGUc-CGUCGG-CGCGCCAGCAGg -3'
miRNA:   3'- uuAGCGuuGCGGUCuGCGCGGUCGUU- -5'
7988 3' -57.5 NC_001973.1 + 95965 0.66 0.788331
Target:  5'- -uUCGacgaGACGgCGGGCGCGCUGGUg- -3'
miRNA:   3'- uuAGCg---UUGCgGUCUGCGCGGUCGuu -5'
7988 3' -57.5 NC_001973.1 + 81806 0.66 0.778991
Target:  5'- --cCGCggUGUCcGGCGcCGCCGGCGg -3'
miRNA:   3'- uuaGCGuuGCGGuCUGC-GCGGUCGUu -5'
7988 3' -57.5 NC_001973.1 + 74805 0.66 0.778991
Target:  5'- --gCGCGcACGCgAGGCGCGUCGuGCGc -3'
miRNA:   3'- uuaGCGU-UGCGgUCUGCGCGGU-CGUu -5'
7988 3' -57.5 NC_001973.1 + 30405 0.66 0.778991
Target:  5'- ---gGCGGCGgCGGAgGCGCC-GCGAa -3'
miRNA:   3'- uuagCGUUGCgGUCUgCGCGGuCGUU- -5'
7988 3' -57.5 NC_001973.1 + 136574 0.67 0.769516
Target:  5'- ---aGCAugGCGCU--GCGCGCCGGCGc -3'
miRNA:   3'- uuagCGU--UGCGGucUGCGCGGUCGUu -5'
7988 3' -57.5 NC_001973.1 + 86847 0.67 0.759915
Target:  5'- uGUCGCGAgGcCCAGugcuCGCGCUgcGGCAu -3'
miRNA:   3'- uUAGCGUUgC-GGUCu---GCGCGG--UCGUu -5'
7988 3' -57.5 NC_001973.1 + 152487 0.67 0.759915
Target:  5'- uAUCGCAA-GCCGGACGaggaGCgGGCu- -3'
miRNA:   3'- uUAGCGUUgCGGUCUGCg---CGgUCGuu -5'
7988 3' -57.5 NC_001973.1 + 18517 0.67 0.759915
Target:  5'- cGUCGUAuauauaacggGCGUacgGGGCGCGCCGGCc- -3'
miRNA:   3'- uUAGCGU----------UGCGg--UCUGCGCGGUCGuu -5'
7988 3' -57.5 NC_001973.1 + 47973 0.67 0.759915
Target:  5'- --aCGCGAgGCUcGGCGCGCCGcGCu- -3'
miRNA:   3'- uuaGCGUUgCGGuCUGCGCGGU-CGuu -5'
7988 3' -57.5 NC_001973.1 + 59913 0.67 0.759915
Target:  5'- --aCGCGA-GCCAGccGCGCGCCgcGGCGc -3'
miRNA:   3'- uuaGCGUUgCGGUC--UGCGCGG--UCGUu -5'
7988 3' -57.5 NC_001973.1 + 34701 0.67 0.759915
Target:  5'- cGGUCGCGugccACGCCAGcagaacgaucaGCGCGagCGGCGAc -3'
miRNA:   3'- -UUAGCGU----UGCGGUC-----------UGCGCg-GUCGUU- -5'
7988 3' -57.5 NC_001973.1 + 45595 0.67 0.759915
Target:  5'- --aCGUAccguCGCCGGcggaGCGCGUCGGCGAu -3'
miRNA:   3'- uuaGCGUu---GCGGUC----UGCGCGGUCGUU- -5'
7988 3' -57.5 NC_001973.1 + 118164 0.67 0.759915
Target:  5'- --cUGCAGCG-CGGACGCGCCGccGCc- -3'
miRNA:   3'- uuaGCGUUGCgGUCUGCGCGGU--CGuu -5'
7988 3' -57.5 NC_001973.1 + 123008 0.67 0.750198
Target:  5'- ---aGCAugaGCGCCucgaaGGGCGcCGCCAGCGu -3'
miRNA:   3'- uuagCGU---UGCGG-----UCUGC-GCGGUCGUu -5'
7988 3' -57.5 NC_001973.1 + 31738 0.67 0.750198
Target:  5'- ---aGCAGCGCCGGGugggcCGUGCCGcGCGc -3'
miRNA:   3'- uuagCGUUGCGGUCU-----GCGCGGU-CGUu -5'
7988 3' -57.5 NC_001973.1 + 109172 0.67 0.740374
Target:  5'- cGGUCGCccgcgcgcuCGCCGaGCGCGCCGcGCAGc -3'
miRNA:   3'- -UUAGCGuu-------GCGGUcUGCGCGGU-CGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.