miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7989 3' -55 NC_001973.1 + 81894 0.65 0.95432
Target:  5'- uCGGCCGcGUcccgacGCAcCACC-ACCGCUaUCg -3'
miRNA:   3'- -GCCGGCaCA------UGUuGUGGcUGGCGA-AG- -5'
7989 3' -55 NC_001973.1 + 52860 0.65 0.95432
Target:  5'- gCGGCCGgucgGUccagcuggcGCcGCGCCGAaacgcaGCUUCa -3'
miRNA:   3'- -GCCGGCa---CA---------UGuUGUGGCUgg----CGAAG- -5'
7989 3' -55 NC_001973.1 + 100029 0.65 0.95432
Target:  5'- gCGGUCGUaauagGCAGCGCCaacGCCGUUUg -3'
miRNA:   3'- -GCCGGCAca---UGUUGUGGc--UGGCGAAg -5'
7989 3' -55 NC_001973.1 + 4790 0.66 0.951929
Target:  5'- aGGCCGUGUugccgauguccacgaGCGcguACGgCGACaCGCUgUCg -3'
miRNA:   3'- gCCGGCACA---------------UGU---UGUgGCUG-GCGA-AG- -5'
7989 3' -55 NC_001973.1 + 36028 0.66 0.950289
Target:  5'- gCGGCCaacagaUACGGCaACCGgcccugcuACCGCUUCg -3'
miRNA:   3'- -GCCGGcac---AUGUUG-UGGC--------UGGCGAAG- -5'
7989 3' -55 NC_001973.1 + 110852 0.66 0.950289
Target:  5'- cCGGCCcacgGUGUACGcguGCCGGCgCGCg-- -3'
miRNA:   3'- -GCCGG----CACAUGUug-UGGCUG-GCGaag -5'
7989 3' -55 NC_001973.1 + 24067 0.66 0.946028
Target:  5'- -cGCCGUGUGCuauuugauGCGCgCGcACCGCg-- -3'
miRNA:   3'- gcCGGCACAUGu-------UGUG-GC-UGGCGaag -5'
7989 3' -55 NC_001973.1 + 96495 0.66 0.946028
Target:  5'- aGGUCGaacuUGcgcUGCcGCAUCGugCGCUUCg -3'
miRNA:   3'- gCCGGC----AC---AUGuUGUGGCugGCGAAG- -5'
7989 3' -55 NC_001973.1 + 63090 0.66 0.946028
Target:  5'- aGGCUGUucacguugGUGC-ACGCCGuggagaaggcGCCGCUUUc -3'
miRNA:   3'- gCCGGCA--------CAUGuUGUGGC----------UGGCGAAG- -5'
7989 3' -55 NC_001973.1 + 59729 0.66 0.946028
Target:  5'- uCGGCUGcUGUGCGACAaCGGCCa---- -3'
miRNA:   3'- -GCCGGC-ACAUGUUGUgGCUGGcgaag -5'
7989 3' -55 NC_001973.1 + 105687 0.66 0.940606
Target:  5'- uCGGUCGUGaGCGGCACgcugaacacggaGACCGCc-- -3'
miRNA:   3'- -GCCGGCACaUGUUGUGg-----------CUGGCGaag -5'
7989 3' -55 NC_001973.1 + 81802 0.66 0.931836
Target:  5'- aCGGCCGcggUGUcCGGCGCCGcCgGCggCg -3'
miRNA:   3'- -GCCGGC---ACAuGUUGUGGCuGgCGaaG- -5'
7989 3' -55 NC_001973.1 + 54977 0.66 0.931836
Target:  5'- aGGCCGgagGCGGCGgCGGCgGCauUUCg -3'
miRNA:   3'- gCCGGCacaUGUUGUgGCUGgCG--AAG- -5'
7989 3' -55 NC_001973.1 + 124706 0.66 0.931836
Target:  5'- uGGCCGagcUGUACGGCagguucuacgGCCugGACCGCg-- -3'
miRNA:   3'- gCCGGC---ACAUGUUG----------UGG--CUGGCGaag -5'
7989 3' -55 NC_001973.1 + 78437 0.66 0.931836
Target:  5'- aGGCCGgcGUGgAGauggACCGGCCGCg-- -3'
miRNA:   3'- gCCGGCa-CAUgUUg---UGGCUGGCGaag -5'
7989 3' -55 NC_001973.1 + 99943 0.66 0.931836
Target:  5'- uGGCCGauuucGUGCAACACCaGCCaGUUg- -3'
miRNA:   3'- gCCGGCa----CAUGUUGUGGcUGG-CGAag -5'
7989 3' -55 NC_001973.1 + 133333 0.66 0.931836
Target:  5'- -aGUCGcGcGCGACGCCGACCGUcgCg -3'
miRNA:   3'- gcCGGCaCaUGUUGUGGCUGGCGaaG- -5'
7989 3' -55 NC_001973.1 + 18530 0.66 0.931836
Target:  5'- aCGGgCGU--ACGgggcGCGCCGGCCGCa-- -3'
miRNA:   3'- -GCCgGCAcaUGU----UGUGGCUGGCGaag -5'
7989 3' -55 NC_001973.1 + 118802 0.67 0.927162
Target:  5'- cCGGCCGcuaugGCGACACaaaacccugucgaaaGcGCCGCUUCa -3'
miRNA:   3'- -GCCGGCaca--UGUUGUGg--------------C-UGGCGAAG- -5'
7989 3' -55 NC_001973.1 + 54059 0.67 0.921187
Target:  5'- gGGCCGU--GCAA-GCCGAUCGCg-- -3'
miRNA:   3'- gCCGGCAcaUGUUgUGGCUGGCGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.