miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7989 5' -53 NC_001973.1 + 134977 0.66 0.985153
Target:  5'- gGCGaucgaguACGUCCGGgccGUCGgGCGggaGCCg -3'
miRNA:   3'- -CGUgu-----UGUAGGCCa--UAGUgCGCg--CGG- -5'
7989 5' -53 NC_001973.1 + 17109 0.66 0.985153
Target:  5'- -gAUGGCGUCCcagcGGag-CGCGgGCGCCa -3'
miRNA:   3'- cgUGUUGUAGG----CCauaGUGCgCGCGG- -5'
7989 5' -53 NC_001973.1 + 82015 0.66 0.985153
Target:  5'- cGUGCGACAgcgCCGacaccugCACGCGCuCCa -3'
miRNA:   3'- -CGUGUUGUa--GGCcaua---GUGCGCGcGG- -5'
7989 5' -53 NC_001973.1 + 120898 0.66 0.985153
Target:  5'- uGCGCAGCG-CCGGUAUUuCGgGauugaGCa -3'
miRNA:   3'- -CGUGUUGUaGGCCAUAGuGCgCg----CGg -5'
7989 5' -53 NC_001973.1 + 121948 0.66 0.985153
Target:  5'- aGCGCAGCAaUCGcuuUCucgACGaCGCGCCa -3'
miRNA:   3'- -CGUGUUGUaGGCcauAG---UGC-GCGCGG- -5'
7989 5' -53 NC_001973.1 + 40032 0.66 0.985153
Target:  5'- cGCGCuGCAgccugagCuCGGUGuacagcUCGCGCaCGCCg -3'
miRNA:   3'- -CGUGuUGUa------G-GCCAU------AGUGCGcGCGG- -5'
7989 5' -53 NC_001973.1 + 121360 0.66 0.984977
Target:  5'- uGCGCGACcucgaccAUCUGGg--C-CGaCGCGCCc -3'
miRNA:   3'- -CGUGUUG-------UAGGCCauaGuGC-GCGCGG- -5'
7989 5' -53 NC_001973.1 + 105478 0.66 0.983321
Target:  5'- gGCACAugAUguggCCGGg--CGCGuUGcCGCCg -3'
miRNA:   3'- -CGUGUugUA----GGCCauaGUGC-GC-GCGG- -5'
7989 5' -53 NC_001973.1 + 44412 0.66 0.983321
Target:  5'- cGCGCAGCAgcggcuccgcUCgGGgAUCgaACGgGCGCUc -3'
miRNA:   3'- -CGUGUUGU----------AGgCCaUAG--UGCgCGCGG- -5'
7989 5' -53 NC_001973.1 + 73739 0.66 0.983321
Target:  5'- uGCcCAgcGCGUUCGc-GUCGCGCGCGUa -3'
miRNA:   3'- -CGuGU--UGUAGGCcaUAGUGCGCGCGg -5'
7989 5' -53 NC_001973.1 + 99180 0.66 0.983321
Target:  5'- cGCGCGGCG-CCaccauGGUGUaCACGCcCGCg -3'
miRNA:   3'- -CGUGUUGUaGG-----CCAUA-GUGCGcGCGg -5'
7989 5' -53 NC_001973.1 + 153424 0.66 0.983321
Target:  5'- uGCAggacCGACGcccaaCCGG-GUCcguCGCGCGCCu -3'
miRNA:   3'- -CGU----GUUGUa----GGCCaUAGu--GCGCGCGG- -5'
7989 5' -53 NC_001973.1 + 3351 0.66 0.983321
Target:  5'- gGUACucGACGcUCUGGUgguaGUC-CGCGuCGCCg -3'
miRNA:   3'- -CGUG--UUGU-AGGCCA----UAGuGCGC-GCGG- -5'
7989 5' -53 NC_001973.1 + 59285 0.66 0.981324
Target:  5'- -aGCAGCAUcgaCCGGUcgggccggCcCGCGCGCUc -3'
miRNA:   3'- cgUGUUGUA---GGCCAua------GuGCGCGCGG- -5'
7989 5' -53 NC_001973.1 + 1195 0.66 0.981324
Target:  5'- cGCGCAucuGCAUCuucuuCGGaGUCGcCGC-CGCCg -3'
miRNA:   3'- -CGUGU---UGUAG-----GCCaUAGU-GCGcGCGG- -5'
7989 5' -53 NC_001973.1 + 7302 0.66 0.981324
Target:  5'- aGCACAccGCGcugUCGGUGa-ACGUGCGCg -3'
miRNA:   3'- -CGUGU--UGUa--GGCCAUagUGCGCGCGg -5'
7989 5' -53 NC_001973.1 + 10764 0.66 0.981324
Target:  5'- uGCGCGACGggcucgUCGuGUugcaccagcagcGUCGCGUagGCGCCg -3'
miRNA:   3'- -CGUGUUGUa-----GGC-CA------------UAGUGCG--CGCGG- -5'
7989 5' -53 NC_001973.1 + 23564 0.66 0.979823
Target:  5'- cCGCAGCcggCCGGcggacgcgccgcccgCGCuGCGCGCCa -3'
miRNA:   3'- cGUGUUGua-GGCCaua------------GUG-CGCGCGG- -5'
7989 5' -53 NC_001973.1 + 38303 0.66 0.979153
Target:  5'- cGCGCAGCGgcaaaCGac-UCGCGCacuGCGCCa -3'
miRNA:   3'- -CGUGUUGUag---GCcauAGUGCG---CGCGG- -5'
7989 5' -53 NC_001973.1 + 125812 0.66 0.979153
Target:  5'- -uGCGACGUgCCGGauucAUCACcaCGCGCUa -3'
miRNA:   3'- cgUGUUGUA-GGCCa---UAGUGc-GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.