miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7989 5' -53 NC_001973.1 + 1044 0.73 0.746521
Target:  5'- uGUACGACAUggCCGacucuaGUGUgCGCGCGCGCUu -3'
miRNA:   3'- -CGUGUUGUA--GGC------CAUA-GUGCGCGCGG- -5'
7989 5' -53 NC_001973.1 + 1195 0.66 0.981324
Target:  5'- cGCGCAucuGCAUCuucuuCGGaGUCGcCGC-CGCCg -3'
miRNA:   3'- -CGUGU---UGUAG-----GCCaUAGU-GCGcGCGG- -5'
7989 5' -53 NC_001973.1 + 1370 0.75 0.624897
Target:  5'- aGCGC-GCGUCCGG-----CGCGCGCCa -3'
miRNA:   3'- -CGUGuUGUAGGCCauaguGCGCGCGG- -5'
7989 5' -53 NC_001973.1 + 3351 0.66 0.983321
Target:  5'- gGUACucGACGcUCUGGUgguaGUC-CGCGuCGCCg -3'
miRNA:   3'- -CGUG--UUGU-AGGCCA----UAGuGCGC-GCGG- -5'
7989 5' -53 NC_001973.1 + 3755 0.67 0.958462
Target:  5'- gGCACGuGCGaaCCGaaccgCGCGCGCGCCc -3'
miRNA:   3'- -CGUGU-UGUa-GGCcaua-GUGCGCGCGG- -5'
7989 5' -53 NC_001973.1 + 4966 0.67 0.958462
Target:  5'- gGCACGGCGagCCGGU----CGUGCGaCCg -3'
miRNA:   3'- -CGUGUUGUa-GGCCAuaguGCGCGC-GG- -5'
7989 5' -53 NC_001973.1 + 5056 0.76 0.614595
Target:  5'- aGCGCAGCGUCaagCGGgggaCGCGCGCGgCg -3'
miRNA:   3'- -CGUGUUGUAG---GCCaua-GUGCGCGCgG- -5'
7989 5' -53 NC_001973.1 + 5158 0.66 0.979153
Target:  5'- gGCcCAGCuggUUGGUGUCcgGCGCGaGCCa -3'
miRNA:   3'- -CGuGUUGua-GGCCAUAG--UGCGCgCGG- -5'
7989 5' -53 NC_001973.1 + 5314 0.72 0.820459
Target:  5'- cGCACuGCAggUUGGUgccGUCGCuGUGCGCCg -3'
miRNA:   3'- -CGUGuUGUa-GGCCA---UAGUG-CGCGCGG- -5'
7989 5' -53 NC_001973.1 + 5841 0.7 0.868897
Target:  5'- gGCGCGuCGUUCGGcgagCGCaCGCGCCg -3'
miRNA:   3'- -CGUGUuGUAGGCCaua-GUGcGCGCGG- -5'
7989 5' -53 NC_001973.1 + 6036 0.68 0.946317
Target:  5'- aGCGC-GC-UCCGuUGaCGCGCGCGCUc -3'
miRNA:   3'- -CGUGuUGuAGGCcAUaGUGCGCGCGG- -5'
7989 5' -53 NC_001973.1 + 7083 0.73 0.765801
Target:  5'- aGCGCGAguugaGUCCGG---CGCGCGCGaCCg -3'
miRNA:   3'- -CGUGUUg----UAGGCCauaGUGCGCGC-GG- -5'
7989 5' -53 NC_001973.1 + 7260 0.73 0.736723
Target:  5'- uGCGCAGCGggcUCGGcg-CGCgGCGCGCCc -3'
miRNA:   3'- -CGUGUUGUa--GGCCauaGUG-CGCGCGG- -5'
7989 5' -53 NC_001973.1 + 7302 0.66 0.981324
Target:  5'- aGCACAccGCGcugUCGGUGa-ACGUGCGCg -3'
miRNA:   3'- -CGUGU--UGUa--GGCCAUagUGCGCGCGg -5'
7989 5' -53 NC_001973.1 + 7596 0.67 0.958462
Target:  5'- cGCGCAACgAUCCcgccuuuUCGCGCaCGCCc -3'
miRNA:   3'- -CGUGUUG-UAGGccau---AGUGCGcGCGG- -5'
7989 5' -53 NC_001973.1 + 7847 0.7 0.876252
Target:  5'- gGCGCcGCGcCCGucgagCugGCGCGCCa -3'
miRNA:   3'- -CGUGuUGUaGGCcaua-GugCGCGCGG- -5'
7989 5' -53 NC_001973.1 + 7937 0.67 0.958462
Target:  5'- uGCGCGGCcggCgUGGUG-CACGCGC-CCg -3'
miRNA:   3'- -CGUGUUGua-G-GCCAUaGUGCGCGcGG- -5'
7989 5' -53 NC_001973.1 + 10201 0.7 0.901507
Target:  5'- gGCACGGCgcccuguggaagaaGUCCGuGUcguagAUCACGuCGCGCa -3'
miRNA:   3'- -CGUGUUG--------------UAGGC-CA-----UAGUGC-GCGCGg -5'
7989 5' -53 NC_001973.1 + 10654 0.69 0.921316
Target:  5'- uGCACGGCGU-CGGcGUCGCGUggcacucguGCGCg -3'
miRNA:   3'- -CGUGUUGUAgGCCaUAGUGCG---------CGCGg -5'
7989 5' -53 NC_001973.1 + 10764 0.66 0.981324
Target:  5'- uGCGCGACGggcucgUCGuGUugcaccagcagcGUCGCGUagGCGCCg -3'
miRNA:   3'- -CGUGUUGUa-----GGC-CA------------UAGUGCG--CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.