Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7992 | 3' | -54.1 | NC_001973.1 | + | 51334 | 0.66 | 0.960939 |
|
Target: 5'- cGGAguugUAGGUGGCgccacaaguugGUCCGGuCUgcGGACCa -3' miRNA: 3'- -CCU----GUUCACCGa----------CAGGUC-GA--UCUGGc -5' |
|||||||
| 7992 | 3' | -54.1 | NC_001973.1 | + | 95755 | 0.66 | 0.956893 |
|
Target: 5'- cGACAAgaucgugcucggcGUGGCcaUGUacgggcgCGGCUGGACCGg -3' miRNA: 3'- cCUGUU-------------CACCG--ACAg------GUCGAUCUGGC- -5' |
|||||||
| 7992 | 3' | -54.1 | NC_001973.1 | + | 6483 | 0.67 | 0.930354 |
|
Target: 5'- aGGACGucaAGggcGuGCUGUaCCGGCUGGGCgGc -3' miRNA: 3'- -CCUGU---UCa--C-CGACA-GGUCGAUCUGgC- -5' |
|||||||
| 7992 | 3' | -54.1 | NC_001973.1 | + | 104367 | 0.68 | 0.913639 |
|
Target: 5'- cGAuCAAGcgGGCguccucGUCCAGCUcGACCa -3' miRNA: 3'- cCU-GUUCa-CCGa-----CAGGUCGAuCUGGc -5' |
|||||||
| 7992 | 3' | -54.1 | NC_001973.1 | + | 81077 | 0.68 | 0.901288 |
|
Target: 5'- gGGACAGGUcgauGGC-GUUCGcGCUGGGCgCGg -3' miRNA: 3'- -CCUGUUCA----CCGaCAGGU-CGAUCUG-GC- -5' |
|||||||
| 7992 | 3' | -54.1 | NC_001973.1 | + | 151017 | 0.7 | 0.842755 |
|
Target: 5'- uGAUu-GUGccuGCUGUCCGGCUcGGCCGa -3' miRNA: 3'- cCUGuuCAC---CGACAGGUCGAuCUGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home