miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7992 5' -55.8 NC_001973.1 + 10353 0.66 0.930805
Target:  5'- cGGCcGUUCGGCUGGcagcccACCGccacgucgcAGUCC-CCg -3'
miRNA:   3'- -CCGaCAGGUCGAUC------UGGC---------UCAGGaGG- -5'
7992 5' -55.8 NC_001973.1 + 95253 0.66 0.920146
Target:  5'- uGCUGcCCuccaucggcGGCUGGACCcuGUCCgaUCCg -3'
miRNA:   3'- cCGACaGG---------UCGAUCUGGcuCAGG--AGG- -5'
7992 5' -55.8 NC_001973.1 + 158733 0.67 0.902406
Target:  5'- aGGCgaggaGUCCAGCUGaagccggcGACCGAG-CgCgcgCCg -3'
miRNA:   3'- -CCGa----CAGGUCGAU--------CUGGCUCaG-Ga--GG- -5'
7992 5' -55.8 NC_001973.1 + 124795 0.68 0.845324
Target:  5'- uGGCcG-CCGGCgaGGGCCGGGgCCUCg -3'
miRNA:   3'- -CCGaCaGGUCGa-UCUGGCUCaGGAGg -5'
7992 5' -55.8 NC_001973.1 + 80027 0.69 0.811179
Target:  5'- cGGCagUGUuuGGCUauggugaugacgGGcuugcgcGCCGGGUCCUCCu -3'
miRNA:   3'- -CCG--ACAggUCGA------------UC-------UGGCUCAGGAGG- -5'
7992 5' -55.8 NC_001973.1 + 40350 0.69 0.794415
Target:  5'- aGUUGUCC-GCgguGACCGuGUCCgugUCCg -3'
miRNA:   3'- cCGACAGGuCGau-CUGGCuCAGG---AGG- -5'
7992 5' -55.8 NC_001973.1 + 151027 0.7 0.747973
Target:  5'- uGCUGUCCGGCUcGGCCGAaggGUCa--- -3'
miRNA:   3'- cCGACAGGUCGAuCUGGCU---CAGgagg -5'
7992 5' -55.8 NC_001973.1 + 41845 0.7 0.747973
Target:  5'- cGGCUGcUCgAGCUgaAGAuCCGAGUCgCgugCCu -3'
miRNA:   3'- -CCGAC-AGgUCGA--UCU-GGCUCAG-Ga--GG- -5'
7992 5' -55.8 NC_001973.1 + 20165 0.7 0.738349
Target:  5'- cGGUUGgCgAGCUGGGCCGuuUCCUUUc -3'
miRNA:   3'- -CCGACaGgUCGAUCUGGCucAGGAGG- -5'
7992 5' -55.8 NC_001973.1 + 25935 0.74 0.548015
Target:  5'- cGCgggCgGGCUcgcGGCCGAGUCCUCCu -3'
miRNA:   3'- cCGacaGgUCGAu--CUGGCUCAGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.