miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7994 5' -53.8 NC_001973.1 + 71244 0.66 0.95656
Target:  5'- uGACCAACccGcGGCGCUACUguucGCAAg -3'
miRNA:   3'- cCUGGUUGaaCaCCGCGGUGGa---UGUU- -5'
7994 5' -53.8 NC_001973.1 + 113019 0.66 0.952563
Target:  5'- cGGCCucCUUGUGaGUGCuCACCaACGAg -3'
miRNA:   3'- cCUGGuuGAACAC-CGCG-GUGGaUGUU- -5'
7994 5' -53.8 NC_001973.1 + 90093 0.66 0.943844
Target:  5'- cGGCCGgcgACUUGccGGCGCCgaaaaGCUUGCGAu -3'
miRNA:   3'- cCUGGU---UGAACa-CCGCGG-----UGGAUGUU- -5'
7994 5' -53.8 NC_001973.1 + 7359 0.67 0.939117
Target:  5'- cGGACCcGCac-UGGCGCCAgaUGCAAc -3'
miRNA:   3'- -CCUGGuUGaacACCGCGGUggAUGUU- -5'
7994 5' -53.8 NC_001973.1 + 81803 0.67 0.917714
Target:  5'- cGGCCGcggUGUccGGCGCCGCCggcgGCGAc -3'
miRNA:   3'- cCUGGUugaACA--CCGCGGUGGa---UGUU- -5'
7994 5' -53.8 NC_001973.1 + 99960 0.67 0.917714
Target:  5'- -cACCAGCcaguugGUGGCGCgCGgCUGCAGg -3'
miRNA:   3'- ccUGGUUGaa----CACCGCG-GUgGAUGUU- -5'
7994 5' -53.8 NC_001973.1 + 123003 0.67 0.916538
Target:  5'- cGGCCAGCaUGagcgccucgaagGGCGCCGCCaGCGu -3'
miRNA:   3'- cCUGGUUGaACa-----------CCGCGGUGGaUGUu -5'
7994 5' -53.8 NC_001973.1 + 89584 0.68 0.905515
Target:  5'- cGGuuCAGCggcGUGGuCGCCACgUACAc -3'
miRNA:   3'- -CCugGUUGaa-CACC-GCGGUGgAUGUu -5'
7994 5' -53.8 NC_001973.1 + 86520 0.68 0.905515
Target:  5'- -cGCCGACc--UGGCGCCGCCgGCGc -3'
miRNA:   3'- ccUGGUUGaacACCGCGGUGGaUGUu -5'
7994 5' -53.8 NC_001973.1 + 71470 0.68 0.885384
Target:  5'- cGugCAGCUguacaauccgGUGGUGCCGCgCUACc- -3'
miRNA:   3'- cCugGUUGAa---------CACCGCGGUG-GAUGuu -5'
7994 5' -53.8 NC_001973.1 + 124338 0.68 0.878199
Target:  5'- -cGCCGAC--GUGGCgGCCGuCCUGCAGa -3'
miRNA:   3'- ccUGGUUGaaCACCG-CGGU-GGAUGUU- -5'
7994 5' -53.8 NC_001973.1 + 46164 0.7 0.803968
Target:  5'- gGGACgGACUgGUGuucGCGCCGCCcGCGg -3'
miRNA:   3'- -CCUGgUUGAaCAC---CGCGGUGGaUGUu -5'
7994 5' -53.8 NC_001973.1 + 126551 0.72 0.716674
Target:  5'- cGGCCAGCgUGUGGCGCaGCC-GCGGg -3'
miRNA:   3'- cCUGGUUGaACACCGCGgUGGaUGUU- -5'
7994 5' -53.8 NC_001973.1 + 158516 0.73 0.623219
Target:  5'- cGACCGGCUUGUuuGCGCCGCCgcCAc -3'
miRNA:   3'- cCUGGUUGAACAc-CGCGGUGGauGUu -5'
7994 5' -53.8 NC_001973.1 + 109135 0.73 0.623219
Target:  5'- cGGCCu-CUUG-GGCGCCGCCUcgACGAg -3'
miRNA:   3'- cCUGGuuGAACaCCGCGGUGGA--UGUU- -5'
7994 5' -53.8 NC_001973.1 + 117242 0.74 0.612753
Target:  5'- uGACCAGCUUG-GGCGCCAgCUcuucgcucACAu -3'
miRNA:   3'- cCUGGUUGAACaCCGCGGUgGA--------UGUu -5'
7994 5' -53.8 NC_001973.1 + 94914 0.75 0.520137
Target:  5'- cGACCGGCaagGUGGUgGCCGCCUACu- -3'
miRNA:   3'- cCUGGUUGaa-CACCG-CGGUGGAUGuu -5'
7994 5' -53.8 NC_001973.1 + 92975 0.98 0.022514
Target:  5'- -cACCAACUUGUGGCGCCACCUACAAc -3'
miRNA:   3'- ccUGGUUGAACACCGCGGUGGAUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.