miRNA display CGI


Results 1 - 20 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7996 5' -58.6 NC_001973.1 + 44452 0.66 0.838236
Target:  5'- -gGGCGCGGgCGC---UCGGGGaucgaacgGGCg -3'
miRNA:   3'- agCCGCGCCgGCGuuaAGUCUCg-------CCG- -5'
7996 5' -58.6 NC_001973.1 + 37756 0.66 0.838236
Target:  5'- cUGGCgGCGGCaguGUAGaUCGGGG-GGCg -3'
miRNA:   3'- aGCCG-CGCCGg--CGUUaAGUCUCgCCG- -5'
7996 5' -58.6 NC_001973.1 + 85721 0.66 0.838236
Target:  5'- -aGGCuCGGCCGCAcggcgUUGGAGuUGGUc -3'
miRNA:   3'- agCCGcGCCGGCGUua---AGUCUC-GCCG- -5'
7996 5' -58.6 NC_001973.1 + 56333 0.66 0.830126
Target:  5'- cUCGGCgccgcgcucGCGGCCGCGc-UCGGGccccgacuCGGCg -3'
miRNA:   3'- -AGCCG---------CGCCGGCGUuaAGUCUc-------GCCG- -5'
7996 5' -58.6 NC_001973.1 + 8100 0.66 0.821844
Target:  5'- aCGGCGagcacCGGCCgGCucgugCAGAuCGGCa -3'
miRNA:   3'- aGCCGC-----GCCGG-CGuuaa-GUCUcGCCG- -5'
7996 5' -58.6 NC_001973.1 + 94301 0.66 0.821844
Target:  5'- gCGGCGCGcCCGCca-UC-GAGCagGGCa -3'
miRNA:   3'- aGCCGCGCcGGCGuuaAGuCUCG--CCG- -5'
7996 5' -58.6 NC_001973.1 + 121556 0.66 0.821844
Target:  5'- gUCGGCGCGuGUgguggaacaCGUAcucgUCGGucGCGGCg -3'
miRNA:   3'- -AGCCGCGC-CG---------GCGUua--AGUCu-CGCCG- -5'
7996 5' -58.6 NC_001973.1 + 111934 0.66 0.813397
Target:  5'- -gGuGCGCGGCgGCGAcUUCuccgacccGGCGGCc -3'
miRNA:   3'- agC-CGCGCCGgCGUU-AAGuc------UCGCCG- -5'
7996 5' -58.6 NC_001973.1 + 13443 0.66 0.813397
Target:  5'- aUCGaCGCGGCCaGCGucguggCGGAggccacGCGGCc -3'
miRNA:   3'- -AGCcGCGCCGG-CGUuaa---GUCU------CGCCG- -5'
7996 5' -58.6 NC_001973.1 + 44398 0.66 0.813397
Target:  5'- cCGGCGgGGguucUCGCg---CAGcAGCGGCu -3'
miRNA:   3'- aGCCGCgCC----GGCGuuaaGUC-UCGCCG- -5'
7996 5' -58.6 NC_001973.1 + 84202 0.66 0.813397
Target:  5'- aUCGcGCGacucgaGGCCGag--UC-GAGCGGCc -3'
miRNA:   3'- -AGC-CGCg-----CCGGCguuaAGuCUCGCCG- -5'
7996 5' -58.6 NC_001973.1 + 136450 0.66 0.813397
Target:  5'- -gGGCGCguagGGCCGCGcgaagUAGgccacguagccGGCGGCg -3'
miRNA:   3'- agCCGCG----CCGGCGUuaa--GUC-----------UCGCCG- -5'
7996 5' -58.6 NC_001973.1 + 137541 0.66 0.813397
Target:  5'- uUCGGCGaCGGCCcgucGUAcgUCGucgcGAGCcGCg -3'
miRNA:   3'- -AGCCGC-GCCGG----CGUuaAGU----CUCGcCG- -5'
7996 5' -58.6 NC_001973.1 + 53679 0.66 0.813397
Target:  5'- cUGGCGCGucuggcGuuGCGAUUCGGcGCcgaGGCu -3'
miRNA:   3'- aGCCGCGC------CggCGUUAAGUCuCG---CCG- -5'
7996 5' -58.6 NC_001973.1 + 61154 0.66 0.813397
Target:  5'- cCGGCGCcGCUcCGcgUCGG-GCGGUc -3'
miRNA:   3'- aGCCGCGcCGGcGUuaAGUCuCGCCG- -5'
7996 5' -58.6 NC_001973.1 + 94399 0.66 0.813397
Target:  5'- aUCGuCGCGGcCCGCGGcgccgccCGGAccgGCGGCg -3'
miRNA:   3'- -AGCcGCGCC-GGCGUUaa-----GUCU---CGCCG- -5'
7996 5' -58.6 NC_001973.1 + 39472 0.66 0.813397
Target:  5'- aUCGGUGCGcGUugaaCGCcuggUCucccauGAGCGGCa -3'
miRNA:   3'- -AGCCGCGC-CG----GCGuua-AGu-----CUCGCCG- -5'
7996 5' -58.6 NC_001973.1 + 134367 0.66 0.812543
Target:  5'- -gGGCGauugcacuCGGCCGauuAUUCcgccuccuuaucgAGAGCGGCc -3'
miRNA:   3'- agCCGC--------GCCGGCgu-UAAG-------------UCUCGCCG- -5'
7996 5' -58.6 NC_001973.1 + 25840 0.66 0.804792
Target:  5'- gUCGGCGCacGGCgCGCAGcaCAcGAcGUGGUg -3'
miRNA:   3'- -AGCCGCG--CCG-GCGUUaaGU-CU-CGCCG- -5'
7996 5' -58.6 NC_001973.1 + 17259 0.66 0.804792
Target:  5'- cUCGGCcgcgGCGGCCGCGcacUCGG-GCaucGCg -3'
miRNA:   3'- -AGCCG----CGCCGGCGUua-AGUCuCGc--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.