miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7999 3' -52.6 NC_001973.1 + 143938 0.66 0.98493
Target:  5'- aGUugAUCGucggCGggaaCGCCGAguGGCa -3'
miRNA:   3'- -UAugUAGCucaaGCa---GCGGCUguCCG- -5'
7999 3' -52.6 NC_001973.1 + 85735 0.66 0.983058
Target:  5'- -gGCGUUgGAGUUgGUCGCCGcCGcGCu -3'
miRNA:   3'- uaUGUAG-CUCAAgCAGCGGCuGUcCG- -5'
7999 3' -52.6 NC_001973.1 + 96942 0.66 0.981016
Target:  5'- -gGCAUCGAcgagccGUUCGacgacuggcgCGCCGACAcGCu -3'
miRNA:   3'- uaUGUAGCU------CAAGCa---------GCGGCUGUcCG- -5'
7999 3' -52.6 NC_001973.1 + 37769 0.66 0.981016
Target:  5'- uGUAgAUCGGGgggCGcCGCCGcGCGGcGCu -3'
miRNA:   3'- -UAUgUAGCUCaa-GCaGCGGC-UGUC-CG- -5'
7999 3' -52.6 NC_001973.1 + 72600 0.66 0.981016
Target:  5'- -gACAagCGaAGgcgUCGUCGUCGaACAGGUc -3'
miRNA:   3'- uaUGUa-GC-UCa--AGCAGCGGC-UGUCCG- -5'
7999 3' -52.6 NC_001973.1 + 96063 0.66 0.978795
Target:  5'- -cGCGUgGgAGaUCGaCGCCGACAacGGCg -3'
miRNA:   3'- uaUGUAgC-UCaAGCaGCGGCUGU--CCG- -5'
7999 3' -52.6 NC_001973.1 + 4746 0.66 0.978795
Target:  5'- -cGCGUCGgccgucaccAGUUCuuuGUcCGCCGGCGGGa -3'
miRNA:   3'- uaUGUAGC---------UCAAG---CA-GCGGCUGUCCg -5'
7999 3' -52.6 NC_001973.1 + 130191 0.66 0.978795
Target:  5'- -cAUAUCGAcgcacgCgGUCGgCGGCAGGCg -3'
miRNA:   3'- uaUGUAGCUcaa---G-CAGCgGCUGUCCG- -5'
7999 3' -52.6 NC_001973.1 + 134124 0.66 0.978795
Target:  5'- ---aGUCGucGUUCGUCGCCG---GGCg -3'
miRNA:   3'- uaugUAGCu-CAAGCAGCGGCuguCCG- -5'
7999 3' -52.6 NC_001973.1 + 80228 0.66 0.976387
Target:  5'- -aGCAaCGAGUccacCGUCGCgCGAaAGGCc -3'
miRNA:   3'- uaUGUaGCUCAa---GCAGCG-GCUgUCCG- -5'
7999 3' -52.6 NC_001973.1 + 61166 0.67 0.973785
Target:  5'- -cGCGUCGGGcg-GUCGCCGACGc-- -3'
miRNA:   3'- uaUGUAGCUCaagCAGCGGCUGUccg -5'
7999 3' -52.6 NC_001973.1 + 45592 0.67 0.973785
Target:  5'- -gGCA-CGuac-CGUCGCCGGCGGaGCg -3'
miRNA:   3'- uaUGUaGCucaaGCAGCGGCUGUC-CG- -5'
7999 3' -52.6 NC_001973.1 + 63828 0.67 0.970981
Target:  5'- -gGCAaCGAGUgcgCGuUCGCCGGCGacuacguguacuGGCc -3'
miRNA:   3'- uaUGUaGCUCAa--GC-AGCGGCUGU------------CCG- -5'
7999 3' -52.6 NC_001973.1 + 55094 0.67 0.970981
Target:  5'- cUGCuUCucGUUCGUCGCCa--AGGCg -3'
miRNA:   3'- uAUGuAGcuCAAGCAGCGGcugUCCG- -5'
7999 3' -52.6 NC_001973.1 + 3730 0.67 0.970981
Target:  5'- -cACGUgcAGgcCGUacaCGCCGACGGGCa -3'
miRNA:   3'- uaUGUAgcUCaaGCA---GCGGCUGUCCG- -5'
7999 3' -52.6 NC_001973.1 + 74747 0.67 0.967968
Target:  5'- -cACAUCGAGccagccgUCGUCGCCGcgaauggaaaACuuGGUg -3'
miRNA:   3'- uaUGUAGCUCa------AGCAGCGGC----------UGu-CCG- -5'
7999 3' -52.6 NC_001973.1 + 39313 0.67 0.967968
Target:  5'- uGUGCGUCGGGcUCGcgcacuggugUCGCaacaGACGGcGCa -3'
miRNA:   3'- -UAUGUAGCUCaAGC----------AGCGg---CUGUC-CG- -5'
7999 3' -52.6 NC_001973.1 + 89091 0.67 0.964739
Target:  5'- --uCGUCGuugUCGUCGUCGagcuccGCGGGCg -3'
miRNA:   3'- uauGUAGCucaAGCAGCGGC------UGUCCG- -5'
7999 3' -52.6 NC_001973.1 + 35796 0.67 0.964739
Target:  5'- -----aCGuGUUCGUgcaCGCCGACAaGGCc -3'
miRNA:   3'- uauguaGCuCAAGCA---GCGGCUGU-CCG- -5'
7999 3' -52.6 NC_001973.1 + 122604 0.67 0.961289
Target:  5'- cUGCGgcgGAGgcgUCGgcggCGCCGACgcGGGCg -3'
miRNA:   3'- uAUGUag-CUCa--AGCa---GCGGCUG--UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.