miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7999 3' -52.6 NC_001973.1 + 3730 0.67 0.970981
Target:  5'- -cACGUgcAGgcCGUacaCGCCGACGGGCa -3'
miRNA:   3'- uaUGUAgcUCaaGCA---GCGGCUGUCCG- -5'
7999 3' -52.6 NC_001973.1 + 4746 0.66 0.978795
Target:  5'- -cGCGUCGgccgucaccAGUUCuuuGUcCGCCGGCGGGa -3'
miRNA:   3'- uaUGUAGC---------UCAAG---CA-GCGGCUGUCCg -5'
7999 3' -52.6 NC_001973.1 + 4926 0.78 0.496156
Target:  5'- -aACGUCGGcGggcUCGUCGCCGACcGGCc -3'
miRNA:   3'- uaUGUAGCU-Ca--AGCAGCGGCUGuCCG- -5'
7999 3' -52.6 NC_001973.1 + 10794 0.68 0.953702
Target:  5'- -aGCGUCGcGUagG-CGCCGAC-GGCg -3'
miRNA:   3'- uaUGUAGCuCAagCaGCGGCUGuCCG- -5'
7999 3' -52.6 NC_001973.1 + 30351 0.77 0.525854
Target:  5'- -cGCAggcCGAGUUCGggcCGCCGGCGcGGCg -3'
miRNA:   3'- uaUGUa--GCUCAAGCa--GCGGCUGU-CCG- -5'
7999 3' -52.6 NC_001973.1 + 32049 0.69 0.930552
Target:  5'- -cGCAUCG----CGUUGCCGGCGGuGCg -3'
miRNA:   3'- uaUGUAGCucaaGCAGCGGCUGUC-CG- -5'
7999 3' -52.6 NC_001973.1 + 35796 0.67 0.964739
Target:  5'- -----aCGuGUUCGUgcaCGCCGACAaGGCc -3'
miRNA:   3'- uauguaGCuCAAGCA---GCGGCUGU-CCG- -5'
7999 3' -52.6 NC_001973.1 + 37769 0.66 0.981016
Target:  5'- uGUAgAUCGGGgggCGcCGCCGcGCGGcGCu -3'
miRNA:   3'- -UAUgUAGCUCaa-GCaGCGGC-UGUC-CG- -5'
7999 3' -52.6 NC_001973.1 + 39260 0.69 0.925185
Target:  5'- ----uUUGAGggCGUCGCCGuCGcGGCg -3'
miRNA:   3'- uauguAGCUCaaGCAGCGGCuGU-CCG- -5'
7999 3' -52.6 NC_001973.1 + 39313 0.67 0.967968
Target:  5'- uGUGCGUCGGGcUCGcgcacuggugUCGCaacaGACGGcGCa -3'
miRNA:   3'- -UAUGUAGCUCaAGC----------AGCGg---CUGUC-CG- -5'
7999 3' -52.6 NC_001973.1 + 41407 0.68 0.948267
Target:  5'- cUAUGUCGcgcgccgccuccgCGUCgGCCGACAGGCu -3'
miRNA:   3'- uAUGUAGCucaa---------GCAG-CGGCUGUCCG- -5'
7999 3' -52.6 NC_001973.1 + 43000 0.68 0.946955
Target:  5'- uUGCGUgCGAGcgccgacucgccgCGUCGCCGACAaGCc -3'
miRNA:   3'- uAUGUA-GCUCaa-----------GCAGCGGCUGUcCG- -5'
7999 3' -52.6 NC_001973.1 + 45592 0.67 0.973785
Target:  5'- -gGCA-CGuac-CGUCGCCGGCGGaGCg -3'
miRNA:   3'- uaUGUaGCucaaGCAGCGGCUGUC-CG- -5'
7999 3' -52.6 NC_001973.1 + 45752 0.68 0.956848
Target:  5'- gAUACAUCGuGaUCGUCGCCGcgcuuaguaguauucGCgcgaaaucaugcucgAGGCg -3'
miRNA:   3'- -UAUGUAGCuCaAGCAGCGGC---------------UG---------------UCCG- -5'
7999 3' -52.6 NC_001973.1 + 54022 0.69 0.930552
Target:  5'- -cGCgAUCGGGUU-GUCGUCGgGCAGGUu -3'
miRNA:   3'- uaUG-UAGCUCAAgCAGCGGC-UGUCCG- -5'
7999 3' -52.6 NC_001973.1 + 55094 0.67 0.970981
Target:  5'- cUGCuUCucGUUCGUCGCCa--AGGCg -3'
miRNA:   3'- uAUGuAGcuCAAGCAGCGGcugUCCG- -5'
7999 3' -52.6 NC_001973.1 + 55531 0.67 0.961289
Target:  5'- --uCGUCGAGcagcgUCG-CGCCGuACAGGg -3'
miRNA:   3'- uauGUAGCUCa----AGCaGCGGC-UGUCCg -5'
7999 3' -52.6 NC_001973.1 + 57224 0.7 0.880772
Target:  5'- -gACGUCGAG---GUCGCCGACGcGGa -3'
miRNA:   3'- uaUGUAGCUCaagCAGCGGCUGU-CCg -5'
7999 3' -52.6 NC_001973.1 + 59940 0.69 0.91371
Target:  5'- -cGCAgcgCGAcgugcucaaucuGUUUG-CGCCGAUAGGCa -3'
miRNA:   3'- uaUGUa--GCU------------CAAGCaGCGGCUGUCCG- -5'
7999 3' -52.6 NC_001973.1 + 61166 0.67 0.973785
Target:  5'- -cGCGUCGGGcg-GUCGCCGACGc-- -3'
miRNA:   3'- uaUGUAGCUCaagCAGCGGCUGUccg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.