Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7999 | 3' | -52.6 | NC_001973.1 | + | 3730 | 0.67 | 0.970981 |
Target: 5'- -cACGUgcAGgcCGUacaCGCCGACGGGCa -3' miRNA: 3'- uaUGUAgcUCaaGCA---GCGGCUGUCCG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 4746 | 0.66 | 0.978795 |
Target: 5'- -cGCGUCGgccgucaccAGUUCuuuGUcCGCCGGCGGGa -3' miRNA: 3'- uaUGUAGC---------UCAAG---CA-GCGGCUGUCCg -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 4926 | 0.78 | 0.496156 |
Target: 5'- -aACGUCGGcGggcUCGUCGCCGACcGGCc -3' miRNA: 3'- uaUGUAGCU-Ca--AGCAGCGGCUGuCCG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 10794 | 0.68 | 0.953702 |
Target: 5'- -aGCGUCGcGUagG-CGCCGAC-GGCg -3' miRNA: 3'- uaUGUAGCuCAagCaGCGGCUGuCCG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 30351 | 0.77 | 0.525854 |
Target: 5'- -cGCAggcCGAGUUCGggcCGCCGGCGcGGCg -3' miRNA: 3'- uaUGUa--GCUCAAGCa--GCGGCUGU-CCG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 32049 | 0.69 | 0.930552 |
Target: 5'- -cGCAUCG----CGUUGCCGGCGGuGCg -3' miRNA: 3'- uaUGUAGCucaaGCAGCGGCUGUC-CG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 35796 | 0.67 | 0.964739 |
Target: 5'- -----aCGuGUUCGUgcaCGCCGACAaGGCc -3' miRNA: 3'- uauguaGCuCAAGCA---GCGGCUGU-CCG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 37769 | 0.66 | 0.981016 |
Target: 5'- uGUAgAUCGGGgggCGcCGCCGcGCGGcGCu -3' miRNA: 3'- -UAUgUAGCUCaa-GCaGCGGC-UGUC-CG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 39260 | 0.69 | 0.925185 |
Target: 5'- ----uUUGAGggCGUCGCCGuCGcGGCg -3' miRNA: 3'- uauguAGCUCaaGCAGCGGCuGU-CCG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 39313 | 0.67 | 0.967968 |
Target: 5'- uGUGCGUCGGGcUCGcgcacuggugUCGCaacaGACGGcGCa -3' miRNA: 3'- -UAUGUAGCUCaAGC----------AGCGg---CUGUC-CG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 41407 | 0.68 | 0.948267 |
Target: 5'- cUAUGUCGcgcgccgccuccgCGUCgGCCGACAGGCu -3' miRNA: 3'- uAUGUAGCucaa---------GCAG-CGGCUGUCCG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 43000 | 0.68 | 0.946955 |
Target: 5'- uUGCGUgCGAGcgccgacucgccgCGUCGCCGACAaGCc -3' miRNA: 3'- uAUGUA-GCUCaa-----------GCAGCGGCUGUcCG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 45592 | 0.67 | 0.973785 |
Target: 5'- -gGCA-CGuac-CGUCGCCGGCGGaGCg -3' miRNA: 3'- uaUGUaGCucaaGCAGCGGCUGUC-CG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 45752 | 0.68 | 0.956848 |
Target: 5'- gAUACAUCGuGaUCGUCGCCGcgcuuaguaguauucGCgcgaaaucaugcucgAGGCg -3' miRNA: 3'- -UAUGUAGCuCaAGCAGCGGC---------------UG---------------UCCG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 54022 | 0.69 | 0.930552 |
Target: 5'- -cGCgAUCGGGUU-GUCGUCGgGCAGGUu -3' miRNA: 3'- uaUG-UAGCUCAAgCAGCGGC-UGUCCG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 55094 | 0.67 | 0.970981 |
Target: 5'- cUGCuUCucGUUCGUCGCCa--AGGCg -3' miRNA: 3'- uAUGuAGcuCAAGCAGCGGcugUCCG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 55531 | 0.67 | 0.961289 |
Target: 5'- --uCGUCGAGcagcgUCG-CGCCGuACAGGg -3' miRNA: 3'- uauGUAGCUCa----AGCaGCGGC-UGUCCg -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 57224 | 0.7 | 0.880772 |
Target: 5'- -gACGUCGAG---GUCGCCGACGcGGa -3' miRNA: 3'- uaUGUAGCUCaagCAGCGGCUGU-CCg -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 59940 | 0.69 | 0.91371 |
Target: 5'- -cGCAgcgCGAcgugcucaaucuGUUUG-CGCCGAUAGGCa -3' miRNA: 3'- uaUGUa--GCU------------CAAGCaGCGGCUGUCCG- -5' |
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7999 | 3' | -52.6 | NC_001973.1 | + | 61166 | 0.67 | 0.973785 |
Target: 5'- -cGCGUCGGGcg-GUCGCCGACGc-- -3' miRNA: 3'- uaUGUAGCUCaagCAGCGGCUGUccg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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