Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8002 | 3' | -61.4 | NC_001973.1 | + | 21188 | 1.01 | 0.003631 |
Target: 5'- gCGUCGGCCGGGGUCGAUCGGGUUCAAg -3' miRNA: 3'- -GCGGCCGGCCCCAGCUAGCCCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 2829 | 1.01 | 0.003631 |
Target: 5'- gCGUCGGCCGGGGUCGAUCGGGUUCAAg -3' miRNA: 3'- -GCGGCCGGCCCCAGCUAGCCCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 2711 | 1.01 | 0.003631 |
Target: 5'- gCGUCGGCCGGGGUCGAUCGGGUUCAAg -3' miRNA: 3'- -GCGGCCGGCCCCAGCUAGCCCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 12454 | 0.9 | 0.023271 |
Target: 5'- gCGUCGGCCGGGGUCGAUCGaGUUCAAg -3' miRNA: 3'- -GCGGCCGGCCCCAGCUAGCcCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 130569 | 0.9 | 0.023271 |
Target: 5'- gCGUCGGCCGGGGUCGAUCGaGUUCAAa -3' miRNA: 3'- -GCGGCCGGCCCCAGCUAGCcCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 130804 | 0.89 | 0.025186 |
Target: 5'- gCGUCGGCCGGGGUCGAUCGaGUUCGAg -3' miRNA: 3'- -GCGGCCGGCCCCAGCUAGCcCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 12220 | 0.84 | 0.05815 |
Target: 5'- uGCCGGCCaGGGUCGAUCGaGUUCAAg -3' miRNA: 3'- gCGGCCGGcCCCAGCUAGCcCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 16468 | 0.83 | 0.067896 |
Target: 5'- uGCCGGCCGGGGUCaAUCGaGUUCAAg -3' miRNA: 3'- gCGGCCGGCCCCAGcUAGCcCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 72238 | 0.83 | 0.067896 |
Target: 5'- uGCCGGCCGGGGUCaAUCGaGUUCAAg -3' miRNA: 3'- gCGGCCGGCCCCAGcUAGCcCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 160728 | 0.81 | 0.092303 |
Target: 5'- gCGCCGGCaaGGGUCaAUCGGGUUCAAg -3' miRNA: 3'- -GCGGCCGgcCCCAGcUAGCCCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 21090 | 0.8 | 0.107438 |
Target: 5'- gCGUCGGCCGGGGUCaAUCGaGUUCAAg -3' miRNA: 3'- -GCGGCCGGCCCCAGcUAGCcCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 160415 | 0.78 | 0.141381 |
Target: 5'- gCGUCGGCCGGuGUCGAUCGaGUUCAAa -3' miRNA: 3'- -GCGGCCGGCCcCAGCUAGCcCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 16389 | 0.77 | 0.180486 |
Target: 5'- gCGUCGGCUaGGGUCGAUCGaGUUCAAg -3' miRNA: 3'- -GCGGCCGGcCCCAGCUAGCcCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 16545 | 0.77 | 0.180486 |
Target: 5'- gCGUCGGCUaGGGUCGAUCGaGUUCAAg -3' miRNA: 3'- -GCGGCCGGcCCCAGCUAGCcCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 130902 | 0.77 | 0.180486 |
Target: 5'- gCGUCGGCUaGGGUCGAUCGaGUUCAAg -3' miRNA: 3'- -GCGGCCGGcCCCAGCUAGCcCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 160571 | 0.77 | 0.180486 |
Target: 5'- gCGUCGGCUaGGGUCGAUCGaGUUCAAg -3' miRNA: 3'- -GCGGCCGGcCCCAGCUAGCcCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 129255 | 0.76 | 0.208323 |
Target: 5'- gCGUCGGCaaGGGUC-AUCGGGUUCAAg -3' miRNA: 3'- -GCGGCCGgcCCCAGcUAGCCCAAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 109563 | 0.75 | 0.234282 |
Target: 5'- aCGCCGGCgCGGGG-CGGguuUCGGGcgCGAg -3' miRNA: 3'- -GCGGCCG-GCCCCaGCU---AGCCCaaGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 160494 | 0.75 | 0.234282 |
Target: 5'- uGCCGGCCaGGGUCGAUgGaGG-UCGAg -3' miRNA: 3'- gCGGCCGGcCCCAGCUAgC-CCaAGUU- -5' |
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8002 | 3' | -61.4 | NC_001973.1 | + | 12298 | 0.75 | 0.251128 |
Target: 5'- uGCCGGCCaGGGUCaAUCGaGUUCAAa -3' miRNA: 3'- gCGGCCGGcCCCAGcUAGCcCAAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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