miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8002 3' -61.4 NC_001973.1 + 2625 0.67 0.646852
Target:  5'- gCGCCGGCCGcGGcCGAUCGuGaGaUCAu -3'
miRNA:   3'- -GCGGCCGGCcCCaGCUAGC-C-CaAGUu -5'
8002 3' -61.4 NC_001973.1 + 2711 1.01 0.003631
Target:  5'- gCGUCGGCCGGGGUCGAUCGGGUUCAAg -3'
miRNA:   3'- -GCGGCCGGCCCCAGCUAGCCCAAGUU- -5'
8002 3' -61.4 NC_001973.1 + 2829 1.01 0.003631
Target:  5'- gCGUCGGCCGGGGUCGAUCGGGUUCAAg -3'
miRNA:   3'- -GCGGCCGGCCCCAGCUAGCCCAAGUU- -5'
8002 3' -61.4 NC_001973.1 + 12141 0.71 0.430772
Target:  5'- gCGUCuGCCGGGGUCaAUCGaGUUCGAg -3'
miRNA:   3'- -GCGGcCGGCCCCAGcUAGCcCAAGUU- -5'
8002 3' -61.4 NC_001973.1 + 12220 0.84 0.05815
Target:  5'- uGCCGGCCaGGGUCGAUCGaGUUCAAg -3'
miRNA:   3'- gCGGCCGGcCCCAGCUAGCcCAAGUU- -5'
8002 3' -61.4 NC_001973.1 + 12298 0.75 0.251128
Target:  5'- uGCCGGCCaGGGUCaAUCGaGUUCAAa -3'
miRNA:   3'- gCGGCCGGcCCCAGcUAGCcCAAGUU- -5'
8002 3' -61.4 NC_001973.1 + 12454 0.9 0.023271
Target:  5'- gCGUCGGCCGGGGUCGAUCGaGUUCAAg -3'
miRNA:   3'- -GCGGCCGGCCCCAGCUAGCcCAAGUU- -5'
8002 3' -61.4 NC_001973.1 + 16389 0.77 0.180486
Target:  5'- gCGUCGGCUaGGGUCGAUCGaGUUCAAg -3'
miRNA:   3'- -GCGGCCGGcCCCAGCUAGCcCAAGUU- -5'
8002 3' -61.4 NC_001973.1 + 16468 0.83 0.067896
Target:  5'- uGCCGGCCGGGGUCaAUCGaGUUCAAg -3'
miRNA:   3'- gCGGCCGGCCCCAGcUAGCcCAAGUU- -5'
8002 3' -61.4 NC_001973.1 + 16545 0.77 0.180486
Target:  5'- gCGUCGGCUaGGGUCGAUCGaGUUCAAg -3'
miRNA:   3'- -GCGGCCGGcCCCAGCUAGCcCAAGUU- -5'
8002 3' -61.4 NC_001973.1 + 20991 0.67 0.617412
Target:  5'- gCGUCGGCUaGGGUCaAUCGaGUUCAAg -3'
miRNA:   3'- -GCGGCCGGcCCCAGcUAGCcCAAGUU- -5'
8002 3' -61.4 NC_001973.1 + 21090 0.8 0.107438
Target:  5'- gCGUCGGCCGGGGUCaAUCGaGUUCAAg -3'
miRNA:   3'- -GCGGCCGGCCCCAGcUAGCcCAAGUU- -5'
8002 3' -61.4 NC_001973.1 + 21188 1.01 0.003631
Target:  5'- gCGUCGGCCGGGGUCGAUCGGGUUCAAg -3'
miRNA:   3'- -GCGGCCGGCCCCAGCUAGCCCAAGUU- -5'
8002 3' -61.4 NC_001973.1 + 72150 0.68 0.549369
Target:  5'- gCGUCGGCaaaGGUCGAUCGaGUUCAAa -3'
miRNA:   3'- -GCGGCCGgccCCAGCUAGCcCAAGUU- -5'
8002 3' -61.4 NC_001973.1 + 72238 0.83 0.067896
Target:  5'- uGCCGGCCGGGGUCaAUCGaGUUCAAg -3'
miRNA:   3'- gCGGCCGGCCCCAGcUAGCcCAAGUU- -5'
8002 3' -61.4 NC_001973.1 + 109563 0.75 0.234282
Target:  5'- aCGCCGGCgCGGGG-CGGguuUCGGGcgCGAg -3'
miRNA:   3'- -GCGGCCG-GCCCCaGCU---AGCCCaaGUU- -5'
8002 3' -61.4 NC_001973.1 + 119117 0.66 0.714814
Target:  5'- uCGUCGGCCGcgcuGGUC-AUCGGGcugUUCGAc -3'
miRNA:   3'- -GCGGCCGGCc---CCAGcUAGCCC---AAGUU- -5'
8002 3' -61.4 NC_001973.1 + 124798 0.72 0.350476
Target:  5'- cCGCCggcgagGGCCGGGGccUCGAUCGGacggUCGAg -3'
miRNA:   3'- -GCGG------CCGGCCCC--AGCUAGCCca--AGUU- -5'
8002 3' -61.4 NC_001973.1 + 127464 0.68 0.549369
Target:  5'- uGCCGGCaaGGGUCaAUCGaGUUCAAa -3'
miRNA:   3'- gCGGCCGgcCCCAGcUAGCcCAAGUU- -5'
8002 3' -61.4 NC_001973.1 + 127542 0.69 0.492971
Target:  5'- uGCCGGCaaGGGUCGAUgGaGG-UCAAg -3'
miRNA:   3'- gCGGCCGgcCCCAGCUAgC-CCaAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.