miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8002 5' -54.6 NC_001973.1 + 120413 0.66 0.938863
Target:  5'- cGUCAgGCCCC-AGCUGGGCgaCGuGCu -3'
miRNA:   3'- cUAGUaCGGGGuUUGACUCGa-GC-CGc -5'
8002 5' -54.6 NC_001973.1 + 121675 0.66 0.933918
Target:  5'- -cUCGcgGCgCCCGGAUaccgguacgcGAGCUCGGCGg -3'
miRNA:   3'- cuAGUa-CG-GGGUUUGa---------CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 91447 0.66 0.933918
Target:  5'- -----cGCCCUGAACaUGAGCcagaCGGCGa -3'
miRNA:   3'- cuaguaCGGGGUUUG-ACUCGa---GCCGC- -5'
8002 5' -54.6 NC_001973.1 + 85806 0.67 0.91761
Target:  5'- aGGUCAUGUCgUAGACgGcGUUCGGCu -3'
miRNA:   3'- -CUAGUACGGgGUUUGaCuCGAGCCGc -5'
8002 5' -54.6 NC_001973.1 + 58455 0.67 0.911683
Target:  5'- --gCGUGCCCgAAauagccgcccGCUGccaaacguGCUCGGCGg -3'
miRNA:   3'- cuaGUACGGGgUU----------UGACu-------CGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 150938 0.67 0.905513
Target:  5'- gGGUCGUugGaggUCAGACUcGAGCUCGGCGg -3'
miRNA:   3'- -CUAGUA--Cgg-GGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 944 0.67 0.899101
Target:  5'- ---gAUG-CUCAGACUGAGCUucCGGCGc -3'
miRNA:   3'- cuagUACgGGGUUUGACUCGA--GCCGC- -5'
8002 5' -54.6 NC_001973.1 + 9084 0.67 0.892451
Target:  5'- uGUCGcGCCgCG---UGAGCUCGGCGc -3'
miRNA:   3'- cUAGUaCGGgGUuugACUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 60657 0.68 0.885566
Target:  5'- aGGUCAUGgaCUCGuuCaagGAGCUCGGCa -3'
miRNA:   3'- -CUAGUACg-GGGUuuGa--CUCGAGCCGc -5'
8002 5' -54.6 NC_001973.1 + 56357 0.68 0.885566
Target:  5'- -cUCggGCCCCGAcucggcGCcGcGCUCGGCGc -3'
miRNA:   3'- cuAGuaCGGGGUU------UGaCuCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 151017 0.68 0.87845
Target:  5'- uGAUUGUGCCU---GCUGuccGGCUCGGCc -3'
miRNA:   3'- -CUAGUACGGGguuUGAC---UCGAGCCGc -5'
8002 5' -54.6 NC_001973.1 + 87567 0.68 0.871108
Target:  5'- cGGUUccGCCCCAcgAACggguagucGAGCUCGGUc -3'
miRNA:   3'- -CUAGuaCGGGGU--UUGa-------CUCGAGCCGc -5'
8002 5' -54.6 NC_001973.1 + 157302 0.68 0.863546
Target:  5'- --cCGUGCCCuCGAACguggaGGGCgaacCGGCGa -3'
miRNA:   3'- cuaGUACGGG-GUUUGa----CUCGa---GCCGC- -5'
8002 5' -54.6 NC_001973.1 + 56495 0.68 0.855769
Target:  5'- -cUCG-GCgCCAAGCUcgggcggggcGGGCUCGGCGc -3'
miRNA:   3'- cuAGUaCGgGGUUUGA----------CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 56441 0.68 0.855769
Target:  5'- -cUCG-GCgCCAAGCUcgggcggggcGGGCUCGGCGc -3'
miRNA:   3'- cuAGUaCGgGGUUUGA----------CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 2864 0.69 0.847783
Target:  5'- aGAUCAUGCUuuGAucac-GCUCGGCGg -3'
miRNA:   3'- -CUAGUACGGggUUugacuCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 71607 0.69 0.847783
Target:  5'- cGAUCGUGgUgCC--GCUGAuGCUCGGCa -3'
miRNA:   3'- -CUAGUAC-GgGGuuUGACU-CGAGCCGc -5'
8002 5' -54.6 NC_001973.1 + 72351 0.69 0.847783
Target:  5'- cAUCAU-CCCU-AACUcGAGCUCGGCc -3'
miRNA:   3'- cUAGUAcGGGGuUUGA-CUCGAGCCGc -5'
8002 5' -54.6 NC_001973.1 + 146103 0.69 0.839597
Target:  5'- aGGUCggGCCgCGGcGCUGAGC-CGGCu -3'
miRNA:   3'- -CUAGuaCGGgGUU-UGACUCGaGCCGc -5'
8002 5' -54.6 NC_001973.1 + 8044 0.69 0.831216
Target:  5'- aGAUCAUGuuggcucuCCUCGucgcGCUGGcGCUCGGCGc -3'
miRNA:   3'- -CUAGUAC--------GGGGUu---UGACU-CGAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.