miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8002 5' -54.6 NC_001973.1 + 12176 0.93 0.045597
Target:  5'- aGAUCAUG-CCUAAACUGAGCUCGGCGg -3'
miRNA:   3'- -CUAGUACgGGGUUUGACUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 12332 0.9 0.068786
Target:  5'- aGAUCAUG-CCCAAACUcGAGCUCGGCGg -3'
miRNA:   3'- -CUAGUACgGGGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 160451 0.89 0.08317
Target:  5'- cAUCAUG-CCUAAACUGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACgGGGUUUGACUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 127499 0.89 0.08317
Target:  5'- cAUCAUG-CCUAAACUGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACgGGGUUUGACUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 12098 0.86 0.124185
Target:  5'- cAUCAUG-CCCAAACUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACgGGGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 129212 0.86 0.124185
Target:  5'- cAUCAUG-CCCAAACUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACgGGGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 129289 0.86 0.124185
Target:  5'- cAUCAUG-CCCAAACUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACgGGGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 130761 0.86 0.124185
Target:  5'- cAUCAUG-CCCAAACUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACgGGGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 160607 0.86 0.124185
Target:  5'- cAUCAUG-CCCAAACUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACgGGGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 130938 0.86 0.124185
Target:  5'- cAUCAUG-CCCAAACUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACgGGGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 130682 0.86 0.127503
Target:  5'- aGAUCAUG-CCUAAACUcGAGCUCGGCGg -3'
miRNA:   3'- -CUAGUACgGGGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 21047 0.85 0.134386
Target:  5'- cAUCAUG-CCCGAGCUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACgGGGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 160684 0.85 0.14161
Target:  5'- aGAUCAUGCCUU-AACUcGAGCUCGGCGg -3'
miRNA:   3'- -CUAGUACGGGGuUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 127342 0.85 0.145354
Target:  5'- aGAUCAcG-CCUAAACUGAGCUCGGCGg -3'
miRNA:   3'- -CUAGUaCgGGGUUUGACUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 160528 0.85 0.145354
Target:  5'- aGAUCAcG-CCUAAACUGAGCUCGGCGg -3'
miRNA:   3'- -CUAGUaCgGGGUUUGACUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 127575 0.82 0.213257
Target:  5'- aGAUCAcG-CCCAAGCUcGAGCUCGGCGg -3'
miRNA:   3'- -CUAGUaCgGGGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 160371 0.82 0.213257
Target:  5'- aGAUCAcG-CCCAAGCUcGAGCUCGGCGg -3'
miRNA:   3'- -CUAGUaCgGGGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 130859 0.82 0.224139
Target:  5'- cAUCAUG-CCUAAACUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACgGGGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 127420 0.82 0.224139
Target:  5'- cAUCAUG-CCUAAACUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACgGGGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 129045 0.81 0.247318
Target:  5'- cAUCAUGCCU-AAACUGAGCUCGGUu -3'
miRNA:   3'- cUAGUACGGGgUUUGACUCGAGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.