miRNA display CGI


Results 21 - 40 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8002 5' -54.6 NC_001973.1 + 83790 0.69 0.831216
Target:  5'- cGGUCGcgGCCCggcacucggaCGAGCUGGGCcgcgcgCGGCGg -3'
miRNA:   3'- -CUAGUa-CGGG----------GUUUGACUCGa-----GCCGC- -5'
8002 5' -54.6 NC_001973.1 + 56398 0.69 0.822649
Target:  5'- uAUCggGCUCgAAGCcGAGCUCGGUa -3'
miRNA:   3'- cUAGuaCGGGgUUUGaCUCGAGCCGc -5'
8002 5' -54.6 NC_001973.1 + 40030 0.7 0.795912
Target:  5'- -cUCGcGCUgCAGcCUGAGCUCGGUGu -3'
miRNA:   3'- cuAGUaCGGgGUUuGACUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 21257 0.7 0.777313
Target:  5'- aGAUCAUG-UCCAAAUcGAGCcgCGGCGu -3'
miRNA:   3'- -CUAGUACgGGGUUUGaCUCGa-GCCGC- -5'
8002 5' -54.6 NC_001973.1 + 72195 0.72 0.667503
Target:  5'- cAUCAUGCU--GAAgUUGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACGGggUUU-GACUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 2668 0.73 0.636411
Target:  5'- cAUCAcG-CCCGAGCUcGAGCUCGGCc -3'
miRNA:   3'- cUAGUaCgGGGUUUGA-CUCGAGCCGc -5'
8002 5' -54.6 NC_001973.1 + 12255 0.73 0.636411
Target:  5'- cAUCAUG-CCUAAACccAGCUCGGCGg -3'
miRNA:   3'- cUAGUACgGGGUUUGacUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 72273 0.73 0.594942
Target:  5'- cAUCAU-CCCU-AACUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUAcGGGGuUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 71926 0.73 0.594942
Target:  5'- cAUCAU-CCCU-AACUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUAcGGGGuUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 16346 0.74 0.574345
Target:  5'- cAUCAcG-CCUAAACUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUaCgGGGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 20942 0.74 0.553916
Target:  5'- uGUCGaGCCggcgcggUAAACUGAGCUCGGCGg -3'
miRNA:   3'- cUAGUaCGGg------GUUUGACUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 39846 0.75 0.523702
Target:  5'- cGAUCGUGCagaugcagaccgCCCAAauACUGcacGCUCGGCGg -3'
miRNA:   3'- -CUAGUACG------------GGGUU--UGACu--CGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 72091 0.76 0.478688
Target:  5'- cAUCAUGCugccggugacaucauCCCuAACUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACG---------------GGGuUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 151047 0.76 0.465364
Target:  5'- gGGUCAuUGCaggUCAGACUcGAGCUCGGCGg -3'
miRNA:   3'- -CUAGU-ACGg--GGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 16503 0.76 0.428404
Target:  5'- cAUCAUGCUUC--GCUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACGGGGuuUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 16425 0.76 0.428404
Target:  5'- cAUCAUGCUUC--GCUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACGGGGuuUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 72013 0.78 0.376367
Target:  5'- cAUCAU-CCCC-AACUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUAcGGGGuUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 160784 0.78 0.359994
Target:  5'- cAUCAcG-CCCAAGCUcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUaCgGGGUUUGA-CUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 72457 0.79 0.313918
Target:  5'- uGUCAUGCCU--AACcGAGCUCGGCGg -3'
miRNA:   3'- cUAGUACGGGguUUGaCUCGAGCCGC- -5'
8002 5' -54.6 NC_001973.1 + 128966 0.8 0.292608
Target:  5'- aGAUCAUG-CUCAAACUcGAGCUCGGCc -3'
miRNA:   3'- -CUAGUACgGGGUUUGA-CUCGAGCCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.