miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8004 5' -54.7 NC_001973.1 + 127097 0.65 0.949916
Target:  5'- uUUGCAAUcgacauauuucaaGCUGGCGGCgacguccUUGGCCACa -3'
miRNA:   3'- uAGCGUUG-------------CGGCCGUUG-------AACUGGUGc -5'
8004 5' -54.7 NC_001973.1 + 97991 0.66 0.946464
Target:  5'- gGUCGCG--GUCGGCGACgu--CCACGc -3'
miRNA:   3'- -UAGCGUugCGGCCGUUGaacuGGUGC- -5'
8004 5' -54.7 NC_001973.1 + 105728 0.66 0.946464
Target:  5'- -gCGCGGCGCCGuuucguGUuGCUcGACCACc -3'
miRNA:   3'- uaGCGUUGCGGC------CGuUGAaCUGGUGc -5'
8004 5' -54.7 NC_001973.1 + 54259 0.66 0.946464
Target:  5'- -gCGCAACGCgUGGCGguugACgUUGACgCACa -3'
miRNA:   3'- uaGCGUUGCG-GCCGU----UG-AACUG-GUGc -5'
8004 5' -54.7 NC_001973.1 + 28403 0.66 0.946022
Target:  5'- --gGCGACGCCGucagugaGCGcGCUUGgcgGCCGCGg -3'
miRNA:   3'- uagCGUUGCGGC-------CGU-UGAAC---UGGUGC- -5'
8004 5' -54.7 NC_001973.1 + 2492 0.66 0.941933
Target:  5'- uUCGCGACGUCGuucGUGGCUacGugCACGg -3'
miRNA:   3'- uAGCGUUGCGGC---CGUUGAa-CugGUGC- -5'
8004 5' -54.7 NC_001973.1 + 122729 0.66 0.941933
Target:  5'- gGUCGCGACGgaCaGCAGCUUGcGCgGCa -3'
miRNA:   3'- -UAGCGUUGCg-GcCGUUGAAC-UGgUGc -5'
8004 5' -54.7 NC_001973.1 + 358 0.66 0.937161
Target:  5'- gGUUGCaAACGCUcacguaccGCAGCUcGACCGCGu -3'
miRNA:   3'- -UAGCG-UUGCGGc-------CGUUGAaCUGGUGC- -5'
8004 5' -54.7 NC_001973.1 + 91991 0.66 0.937161
Target:  5'- uGUCGUguuGCGCuucCGcCAGCUUGGCCGCa -3'
miRNA:   3'- -UAGCGu--UGCG---GCcGUUGAACUGGUGc -5'
8004 5' -54.7 NC_001973.1 + 29026 0.66 0.932146
Target:  5'- cGUCGCGguACGCCucGGCGACgaacagcGugCACa -3'
miRNA:   3'- -UAGCGU--UGCGG--CCGUUGaa-----CugGUGc -5'
8004 5' -54.7 NC_001973.1 + 98267 0.66 0.929019
Target:  5'- gGUCGCGuucgcuccgcacuguGCGCUGGCGugUacUGAC-ACGg -3'
miRNA:   3'- -UAGCGU---------------UGCGGCCGUugA--ACUGgUGC- -5'
8004 5' -54.7 NC_001973.1 + 139010 0.66 0.926886
Target:  5'- -cCGcCGGCGCCaGCAGCUcccGCCACa -3'
miRNA:   3'- uaGC-GUUGCGGcCGUUGAac-UGGUGc -5'
8004 5' -54.7 NC_001973.1 + 86358 0.66 0.926886
Target:  5'- --gGCGACGCCGGCAGuuauaaGGCCGa- -3'
miRNA:   3'- uagCGUUGCGGCCGUUgaa---CUGGUgc -5'
8004 5' -54.7 NC_001973.1 + 80202 0.66 0.926886
Target:  5'- -gCGCGcACGCCGuCGAg-UGGCCGCGg -3'
miRNA:   3'- uaGCGU-UGCGGCcGUUgaACUGGUGC- -5'
8004 5' -54.7 NC_001973.1 + 24278 0.66 0.926886
Target:  5'- -cCGCGcggGCGCCucGGCGAaugggcGACCACGg -3'
miRNA:   3'- uaGCGU---UGCGG--CCGUUgaa---CUGGUGC- -5'
8004 5' -54.7 NC_001973.1 + 86892 0.66 0.926347
Target:  5'- -cUGCAGCG-CGGCGacgACUUGAacuacauCCACGg -3'
miRNA:   3'- uaGCGUUGCgGCCGU---UGAACU-------GGUGC- -5'
8004 5' -54.7 NC_001973.1 + 97133 0.67 0.921382
Target:  5'- gGUCGagaacgaAACGCCGGCucGACU-GAUCGCc -3'
miRNA:   3'- -UAGCg------UUGCGGCCG--UUGAaCUGGUGc -5'
8004 5' -54.7 NC_001973.1 + 109431 0.67 0.921382
Target:  5'- aGUCG-AGCaGCCGGUAGaggcUGGCCGCGu -3'
miRNA:   3'- -UAGCgUUG-CGGCCGUUga--ACUGGUGC- -5'
8004 5' -54.7 NC_001973.1 + 137199 0.67 0.921382
Target:  5'- cUCGCGGCGCgagucgcgCGGCGGCgcGuCCGCa -3'
miRNA:   3'- uAGCGUUGCG--------GCCGUUGaaCuGGUGc -5'
8004 5' -54.7 NC_001973.1 + 23914 0.67 0.921382
Target:  5'- -aCGUGACGCUGacGCGGCUcGACUGCGc -3'
miRNA:   3'- uaGCGUUGCGGC--CGUUGAaCUGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.