miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8009 3' -54.1 NC_001973.1 + 62632 0.66 0.972466
Target:  5'- cGCGCCGACCUGauaUUCGUCaaaaagcccUUCUUc -3'
miRNA:   3'- -CGCGGCUGGAC---AGGCAGaca------AAGAGc -5'
8009 3' -54.1 NC_001973.1 + 117804 0.66 0.969625
Target:  5'- uGCGCCGGCCUGUUC--CUGa---UCGu -3'
miRNA:   3'- -CGCGGCUGGACAGGcaGACaaagAGC- -5'
8009 3' -54.1 NC_001973.1 + 77888 0.66 0.969625
Target:  5'- -aGCCcgagGACCUGUgCCGUCgcaugCUCGa -3'
miRNA:   3'- cgCGG----CUGGACA-GGCAGacaaaGAGC- -5'
8009 3' -54.1 NC_001973.1 + 113709 0.67 0.948113
Target:  5'- cGCGUCG-CCgcuucgcGUCCGUCg---UCUCGa -3'
miRNA:   3'- -CGCGGCuGGa------CAGGCAGacaaAGAGC- -5'
8009 3' -54.1 NC_001973.1 + 94727 0.67 0.948113
Target:  5'- gGCgGCCGGCaagcgcgcGUCCGUgUGcgUCUCGa -3'
miRNA:   3'- -CG-CGGCUGga------CAGGCAgACaaAGAGC- -5'
8009 3' -54.1 NC_001973.1 + 53068 0.67 0.943741
Target:  5'- gGCGCCcGCCUGUUgacgagCGUCgcGUaaUUCUCGa -3'
miRNA:   3'- -CGCGGcUGGACAG------GCAGa-CA--AAGAGC- -5'
8009 3' -54.1 NC_001973.1 + 101981 0.67 0.943741
Target:  5'- cGCGCCaGCgUGUCCGUgUG---CUCGu -3'
miRNA:   3'- -CGCGGcUGgACAGGCAgACaaaGAGC- -5'
8009 3' -54.1 NC_001973.1 + 7101 0.68 0.934294
Target:  5'- cGCGCgCGACCg--CCGUCgug--CUCGa -3'
miRNA:   3'- -CGCG-GCUGGacaGGCAGacaaaGAGC- -5'
8009 3' -54.1 NC_001973.1 + 16047 0.69 0.900278
Target:  5'- cGCGCCGGCCggaGUUaauaGUCgUGUUUCgaUCGc -3'
miRNA:   3'- -CGCGGCUGGa--CAGg---CAG-ACAAAG--AGC- -5'
8009 3' -54.1 NC_001973.1 + 74362 0.7 0.858024
Target:  5'- aGCGgCGcACCg--CCGUCUGgccgUUCUCGc -3'
miRNA:   3'- -CGCgGC-UGGacaGGCAGACa---AAGAGC- -5'
8009 3' -54.1 NC_001973.1 + 81958 0.71 0.817211
Target:  5'- aGCGCUGGCC-GUCCGagUGcgUUUCGa -3'
miRNA:   3'- -CGCGGCUGGaCAGGCagACaaAGAGC- -5'
8009 3' -54.1 NC_001973.1 + 46550 0.75 0.56244
Target:  5'- aGCGCCGACCgGcCCGUCgug--CUCGa -3'
miRNA:   3'- -CGCGGCUGGaCaGGCAGacaaaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.