miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8011 3' -48.5 NC_001973.1 + 34825 0.66 0.999685
Target:  5'- ---uGUUUgccgCGuCGAauaaaacugcGCUCGCCGCCg -3'
miRNA:   3'- gguuCAAAaa--GUuGCU----------CGAGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 25049 0.66 0.999685
Target:  5'- gCCcGGUcaucaacaUCGACGcGUUCGCgCGCCa -3'
miRNA:   3'- -GGuUCAaaa-----AGUUGCuCGAGCG-GCGG- -5'
8011 3' -48.5 NC_001973.1 + 133836 0.66 0.999685
Target:  5'- -aGAGcgugUCGACGAugaugcaCUUGCCGCCg -3'
miRNA:   3'- ggUUCaaaaAGUUGCUc------GAGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 91544 0.66 0.999685
Target:  5'- gCCGgcGGUUcgUCGGCG-GCgUCGCaCGCUu -3'
miRNA:   3'- -GGU--UCAAaaAGUUGCuCG-AGCG-GCGG- -5'
8011 3' -48.5 NC_001973.1 + 105193 0.66 0.999685
Target:  5'- aUAGGUcgaUC-GCGGGCaCGCUGCCa -3'
miRNA:   3'- gGUUCAaaaAGuUGCUCGaGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 117151 0.66 0.999685
Target:  5'- aCGacGGUg--UCcACGAaauagaagggcaGCUUGCCGCCg -3'
miRNA:   3'- gGU--UCAaaaAGuUGCU------------CGAGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 133895 0.66 0.999685
Target:  5'- aCCucGUUc-UCGGCGcccucgcGCgUCGCCGCCg -3'
miRNA:   3'- -GGuuCAAaaAGUUGCu------CG-AGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 118431 0.66 0.999677
Target:  5'- gCCGGGc---UCGACGAGCgcaagCGCgacaaauggcgccCGCCg -3'
miRNA:   3'- -GGUUCaaaaAGUUGCUCGa----GCG-------------GCGG- -5'
8011 3' -48.5 NC_001973.1 + 64839 0.66 0.999646
Target:  5'- aCAAGUggaacuacacgUUCGagagcgccgucccuGCGGGCUCG-CGCCc -3'
miRNA:   3'- gGUUCAaa---------AAGU--------------UGCUCGAGCgGCGG- -5'
8011 3' -48.5 NC_001973.1 + 100483 0.66 0.999638
Target:  5'- uCUAGGUUgcggUUguuguuuaaaaaucgCAACGAGaUgGCCGCCg -3'
miRNA:   3'- -GGUUCAAa---AA---------------GUUGCUCgAgCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 108244 0.66 0.999603
Target:  5'- gCCAAGgagaUCGACG-GCU-GCCGgCg -3'
miRNA:   3'- -GGUUCaaaaAGUUGCuCGAgCGGCgG- -5'
8011 3' -48.5 NC_001973.1 + 36077 0.66 0.999594
Target:  5'- gCCucGUggcguaUUCGcacgugaccGCGAGCcagauccUCGCCGCCg -3'
miRNA:   3'- -GGuuCAaa----AAGU---------UGCUCG-------AGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 9614 0.66 0.999504
Target:  5'- cCgGAGUgaaaCAGCGA--UCGCCGCUg -3'
miRNA:   3'- -GgUUCAaaaaGUUGCUcgAGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 73801 0.66 0.999504
Target:  5'- gCCAGGcuc-UCGACGcGCUCGgugCGCCc -3'
miRNA:   3'- -GGUUCaaaaAGUUGCuCGAGCg--GCGG- -5'
8011 3' -48.5 NC_001973.1 + 24126 0.66 0.999384
Target:  5'- gCCGGGcgagcUC-GCGGGUgcgcgCGCCGCCc -3'
miRNA:   3'- -GGUUCaaaa-AGuUGCUCGa----GCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 7086 0.66 0.999384
Target:  5'- gCGAGUUgagucCGGCGcGCgCGaCCGCCg -3'
miRNA:   3'- gGUUCAAaaa--GUUGCuCGaGC-GGCGG- -5'
8011 3' -48.5 NC_001973.1 + 13274 0.66 0.999384
Target:  5'- gCAAG----UCAcCGAGCUgGUCGCUa -3'
miRNA:   3'- gGUUCaaaaAGUuGCUCGAgCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 16561 0.66 0.999384
Target:  5'- aUCGAGUUcaagccCGAUGAGaucaUGCCGCCg -3'
miRNA:   3'- -GGUUCAAaaa---GUUGCUCga--GCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 74873 0.67 0.999239
Target:  5'- uCCAcGGUgucgUCGuggaGCGAGCUCGCgaGCg -3'
miRNA:   3'- -GGU-UCAaaa-AGU----UGCUCGAGCGg-CGg -5'
8011 3' -48.5 NC_001973.1 + 144077 0.67 0.999239
Target:  5'- -gAAGcuguaCAGCGAGUUCGCCGaCUu -3'
miRNA:   3'- ggUUCaaaaaGUUGCUCGAGCGGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.