miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8011 3' -48.5 NC_001973.1 + 4903 0.85 0.43477
Target:  5'- gCCGGGUUcgUUaucgugacggaaacgUCGGCGGGCUCGUCGCCg -3'
miRNA:   3'- -GGUUCAA--AA---------------AGUUGCUCGAGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 141541 0.81 0.6235
Target:  5'- gUCAAGUacacCAAC-AGCUCGCCGCCg -3'
miRNA:   3'- -GGUUCAaaaaGUUGcUCGAGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 32529 0.79 0.696541
Target:  5'- uCCAAGUccaagUUC-GCGAGCucggcgaUCGCCGCCg -3'
miRNA:   3'- -GGUUCAaa---AAGuUGCUCG-------AGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 126792 0.79 0.728644
Target:  5'- gUCAGGUcgucaaUUUUAACGAGCgCGCCGCUa -3'
miRNA:   3'- -GGUUCAa-----AAAGUUGCUCGaGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 48074 0.78 0.748917
Target:  5'- gCGAGgacgcgUUCAcgcugcgguACGuGCUCGCCGCCg -3'
miRNA:   3'- gGUUCaaa---AAGU---------UGCuCGAGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 10759 0.78 0.778469
Target:  5'- gCGGGUgcg-CGACGGGCUCGUCGUg -3'
miRNA:   3'- gGUUCAaaaaGUUGCUCGAGCGGCGg -5'
8011 3' -48.5 NC_001973.1 + 158012 0.77 0.797479
Target:  5'- -uGAGaUUUUUCAAuCGGGUgugCGCCGCCg -3'
miRNA:   3'- ggUUC-AAAAAGUU-GCUCGa--GCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 144355 0.76 0.842019
Target:  5'- gCGAGgacgagGACGAGC-CGCCGCCg -3'
miRNA:   3'- gGUUCaaaaagUUGCUCGaGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 7625 0.76 0.847039
Target:  5'- cCCGAGcagcugcGCGcGCUCGCCGCCa -3'
miRNA:   3'- -GGUUCaaaaaguUGCuCGAGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 117617 0.76 0.866343
Target:  5'- gCGAGgg-UUCGACGuagacuGCggCGCCGCCg -3'
miRNA:   3'- gGUUCaaaAAGUUGCu-----CGa-GCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 25904 0.75 0.874759
Target:  5'- uCCAGGcaaacggagcaCAGC-AGCUCGCCGCCg -3'
miRNA:   3'- -GGUUCaaaaa------GUUGcUCGAGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 131476 0.75 0.878491
Target:  5'- aCAGGUggagguggaggUCGGCGGGCcCGCCGCg -3'
miRNA:   3'- gGUUCAaaa--------AGUUGCUCGaGCGGCGg -5'
8011 3' -48.5 NC_001973.1 + 56501 0.75 0.881434
Target:  5'- gCCAAGcucgggCGggGCGGGCUCGgCGCCa -3'
miRNA:   3'- -GGUUCaaaaa-GU--UGCUCGAGCgGCGG- -5'
8011 3' -48.5 NC_001973.1 + 56447 0.75 0.881434
Target:  5'- gCCAAGcucgggCGggGCGGGCUCGgCGCCa -3'
miRNA:   3'- -GGUUCaaaaa-GU--UGCUCGAGCgGCGG- -5'
8011 3' -48.5 NC_001973.1 + 36971 0.75 0.888623
Target:  5'- uCCGAaacugUUCgAACG-GCUCGCCGCCc -3'
miRNA:   3'- -GGUUcaaa-AAG-UUGCuCGAGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 137264 0.74 0.9149
Target:  5'- gCCGAGUgugcggCGGCgGGGCUCGgCCGCg -3'
miRNA:   3'- -GGUUCAaaaa--GUUG-CUCGAGC-GGCGg -5'
8011 3' -48.5 NC_001973.1 + 16969 0.74 0.920833
Target:  5'- cCCGAGUUUUuggUCGugGcGGCcgCGCcCGCCa -3'
miRNA:   3'- -GGUUCAAAA---AGUugC-UCGa-GCG-GCGG- -5'
8011 3' -48.5 NC_001973.1 + 93761 0.74 0.920833
Target:  5'- aCCAGG------AGCGGGC-CGCCGCCg -3'
miRNA:   3'- -GGUUCaaaaagUUGCUCGaGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 121507 0.73 0.94199
Target:  5'- gCgAAGUcgUUCAGCGcGaaCGCCGCCa -3'
miRNA:   3'- -GgUUCAaaAAGUUGCuCgaGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 138023 0.73 0.94199
Target:  5'- uCCAGGgug-UCGACcAGCgCGCCGUCg -3'
miRNA:   3'- -GGUUCaaaaAGUUGcUCGaGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.