miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8011 3' -48.5 NC_001973.1 + 3509 0.7 0.984174
Target:  5'- gCCAcGUcga-CGACGaAGCcCGCCGCCa -3'
miRNA:   3'- -GGUuCAaaaaGUUGC-UCGaGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 4903 0.85 0.43477
Target:  5'- gCCGGGUUcgUUaucgugacggaaacgUCGGCGGGCUCGUCGCCg -3'
miRNA:   3'- -GGUUCAA--AA---------------AGUUGCUCGAGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 5842 0.71 0.980023
Target:  5'- gCGcGUcgUUCGGCGAGCgcacgCGCCGgCg -3'
miRNA:   3'- gGUuCAaaAAGUUGCUCGa----GCGGCgG- -5'
8011 3' -48.5 NC_001973.1 + 6410 0.68 0.997018
Target:  5'- gCCGAGUgcg-CGgcggcggcgcgccgACGAGCgcgccCGUCGCCg -3'
miRNA:   3'- -GGUUCAaaaaGU--------------UGCUCGa----GCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 7047 0.67 0.998619
Target:  5'- aCGAGUcggUCGugaACGAGCU-GCgCGCCc -3'
miRNA:   3'- gGUUCAaaaAGU---UGCUCGAgCG-GCGG- -5'
8011 3' -48.5 NC_001973.1 + 7086 0.66 0.999384
Target:  5'- gCGAGUUgagucCGGCGcGCgCGaCCGCCg -3'
miRNA:   3'- gGUUCAAaaa--GUUGCuCGaGC-GGCGG- -5'
8011 3' -48.5 NC_001973.1 + 7250 0.71 0.979567
Target:  5'- gUCGAGcagaugcgCAGCGGGCUCGgCGCg -3'
miRNA:   3'- -GGUUCaaaaa---GUUGCUCGAGCgGCGg -5'
8011 3' -48.5 NC_001973.1 + 7625 0.76 0.847039
Target:  5'- cCCGAGcagcugcGCGcGCUCGCCGCCa -3'
miRNA:   3'- -GGUUCaaaaaguUGCuCGAGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 7705 0.7 0.989131
Target:  5'- -------aUUCGaaACGAGCgCGCCGCCc -3'
miRNA:   3'- gguucaaaAAGU--UGCUCGaGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 8451 0.69 0.991696
Target:  5'- --------gUCGACGAaccGCUCGCCGaCCa -3'
miRNA:   3'- gguucaaaaAGUUGCU---CGAGCGGC-GG- -5'
8011 3' -48.5 NC_001973.1 + 8824 0.67 0.999239
Target:  5'- ---------aCGACGAGCcCGCcCGCCg -3'
miRNA:   3'- gguucaaaaaGUUGCUCGaGCG-GCGG- -5'
8011 3' -48.5 NC_001973.1 + 9143 0.67 0.998619
Target:  5'- --------aUCGACGAgGCgUCGCCGUCg -3'
miRNA:   3'- gguucaaaaAGUUGCU-CG-AGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 9614 0.66 0.999504
Target:  5'- cCgGAGUgaaaCAGCGA--UCGCCGCUg -3'
miRNA:   3'- -GgUUCAaaaaGUUGCUcgAGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 10524 0.72 0.953963
Target:  5'- gCCAGGcagUaggaggagcccggcUCGACGAcguGCUCGUCGCCg -3'
miRNA:   3'- -GGUUCaaaA--------------AGUUGCU---CGAGCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 10759 0.78 0.778469
Target:  5'- gCGGGUgcg-CGACGGGCUCGUCGUg -3'
miRNA:   3'- gGUUCAaaaaGUUGCUCGAGCGGCGg -5'
8011 3' -48.5 NC_001973.1 + 13274 0.66 0.999384
Target:  5'- gCAAG----UCAcCGAGCUgGUCGCUa -3'
miRNA:   3'- gGUUCaaaaAGUuGCUCGAgCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 16561 0.66 0.999384
Target:  5'- aUCGAGUUcaagccCGAUGAGaucaUGCCGCCg -3'
miRNA:   3'- -GGUUCAAaaa---GUUGCUCga--GCGGCGG- -5'
8011 3' -48.5 NC_001973.1 + 16969 0.74 0.920833
Target:  5'- cCCGAGUUUUuggUCGugGcGGCcgCGCcCGCCa -3'
miRNA:   3'- -GGUUCAAAA---AGUugC-UCGa-GCG-GCGG- -5'
8011 3' -48.5 NC_001973.1 + 22646 0.71 0.972348
Target:  5'- gCGGGgacugcUCAACGuGUUCGCgGCCa -3'
miRNA:   3'- gGUUCaaaa--AGUUGCuCGAGCGgCGG- -5'
8011 3' -48.5 NC_001973.1 + 24126 0.66 0.999384
Target:  5'- gCCGGGcgagcUC-GCGGGUgcgcgCGCCGCCc -3'
miRNA:   3'- -GGUUCaaaa-AGuUGCUCGa----GCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.