miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8011 5' -56.1 NC_001973.1 + 7194 0.66 0.906546
Target:  5'- cGGGCGGguuCGuGCCGgUCGAAauaaAGUg- -3'
miRNA:   3'- aCCCGCC---GCuCGGCaAGCUUg---UCAaa -5'
8011 5' -56.1 NC_001973.1 + 17842 0.66 0.906546
Target:  5'- aGGGUGGCGuGCCcgUCGAAaaAGUa- -3'
miRNA:   3'- aCCCGCCGCuCGGcaAGCUUg-UCAaa -5'
8011 5' -56.1 NC_001973.1 + 133301 0.66 0.900234
Target:  5'- -cGGCGGCGGcGCCGU-CGcGCGGc-- -3'
miRNA:   3'- acCCGCCGCU-CGGCAaGCuUGUCaaa -5'
8011 5' -56.1 NC_001973.1 + 4649 0.66 0.89959
Target:  5'- -cGGCGGCGGgcGCCGUcggcgagUCGGACAc--- -3'
miRNA:   3'- acCCGCCGCU--CGGCA-------AGCUUGUcaaa -5'
8011 5' -56.1 NC_001973.1 + 56455 0.66 0.893688
Target:  5'- cGGGCggGGCGGGCuCGgcgccaagcUCGGGCGGg-- -3'
miRNA:   3'- aCCCG--CCGCUCG-GCa--------AGCUUGUCaaa -5'
8011 5' -56.1 NC_001973.1 + 56509 0.66 0.893688
Target:  5'- cGGGCggGGCGGGCuCGgcgccaagcUCGGGCGGg-- -3'
miRNA:   3'- aCCCG--CCGCUCG-GCa--------AGCUUGUCaaa -5'
8011 5' -56.1 NC_001973.1 + 152405 0.66 0.893688
Target:  5'- gGGGCGGCGcGCaaacuuauCGcgCGGACGGg-- -3'
miRNA:   3'- aCCCGCCGCuCG--------GCaaGCUUGUCaaa -5'
8011 5' -56.1 NC_001973.1 + 109142 0.67 0.872677
Target:  5'- uUGGGCGccgccucgaCGAGCCGggCGAGcCGGUc- -3'
miRNA:   3'- -ACCCGCc--------GCUCGGCaaGCUU-GUCAaa -5'
8011 5' -56.1 NC_001973.1 + 63646 0.67 0.865232
Target:  5'- gGGGCGGCGcGCCGgccgccuguUUCGAGggacacgacCGGUg- -3'
miRNA:   3'- aCCCGCCGCuCGGC---------AAGCUU---------GUCAaa -5'
8011 5' -56.1 NC_001973.1 + 53414 0.67 0.865232
Target:  5'- cGGGCGGaGcGCCGggcgcgUCGaAGCAGUa- -3'
miRNA:   3'- aCCCGCCgCuCGGCa-----AGC-UUGUCAaa -5'
8011 5' -56.1 NC_001973.1 + 10338 0.67 0.849712
Target:  5'- uUGaGGuCGGCGAugcgGCCGUUCGGcugGCAGc-- -3'
miRNA:   3'- -AC-CC-GCCGCU----CGGCAAGCU---UGUCaaa -5'
8011 5' -56.1 NC_001973.1 + 7842 0.67 0.849712
Target:  5'- cGGGCGGCGccgcGCCcgUCGAGCuGg-- -3'
miRNA:   3'- aCCCGCCGCu---CGGcaAGCUUGuCaaa -5'
8011 5' -56.1 NC_001973.1 + 94299 0.67 0.841649
Target:  5'- -aGGCGGCGcGCCcgccaUCGAGCAGg-- -3'
miRNA:   3'- acCCGCCGCuCGGca---AGCUUGUCaaa -5'
8011 5' -56.1 NC_001973.1 + 139051 0.67 0.833394
Target:  5'- cGGaaguCGGCGAaguGCCGUUCGAGCGcGUc- -3'
miRNA:   3'- aCCc---GCCGCU---CGGCAAGCUUGU-CAaa -5'
8011 5' -56.1 NC_001973.1 + 45441 0.68 0.807552
Target:  5'- uUGGGCGGuCGGGuuG-UCGcACAGg-- -3'
miRNA:   3'- -ACCCGCC-GCUCggCaAGCuUGUCaaa -5'
8011 5' -56.1 NC_001973.1 + 146062 0.68 0.807552
Target:  5'- uUGGGCcgcGGCgccGAGCCGgcUCGGGCGGg-- -3'
miRNA:   3'- -ACCCG---CCG---CUCGGCa-AGCUUGUCaaa -5'
8011 5' -56.1 NC_001973.1 + 132546 0.68 0.807552
Target:  5'- cGcGGCGGCGGGCuCGagCGcGGCGGUg- -3'
miRNA:   3'- aC-CCGCCGCUCG-GCaaGC-UUGUCAaa -5'
8011 5' -56.1 NC_001973.1 + 50105 0.68 0.798606
Target:  5'- aGGGCGGCGGcGCCGccgCGuaaaAGUUg -3'
miRNA:   3'- aCCCGCCGCU-CGGCaa-GCuug-UCAAa -5'
8011 5' -56.1 NC_001973.1 + 14376 0.68 0.794984
Target:  5'- gGGcGCGGCGAgGCCGgacaguagcccgCGAACAGc-- -3'
miRNA:   3'- aCC-CGCCGCU-CGGCaa----------GCUUGUCaaa -5'
8011 5' -56.1 NC_001973.1 + 144463 0.68 0.789507
Target:  5'- cGGGCGGCGuGCgGgaCaAGCGGUUc -3'
miRNA:   3'- aCCCGCCGCuCGgCaaGcUUGUCAAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.