miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8016 3' -63.1 NC_001973.1 + 23160 0.66 0.619479
Target:  5'- --gGCGCucaaacgccucuUCGCgCGCCACUGC-CUGCa -3'
miRNA:   3'- cagCGCGu-----------AGCG-GCGGUGGCGcGGCG- -5'
8016 3' -63.1 NC_001973.1 + 103876 0.66 0.615603
Target:  5'- aUCGUGCGgcacgacaUCGacgaggagagcgaGCCGCCGCGgCGCg -3'
miRNA:   3'- cAGCGCGU--------AGCgg-----------CGGUGGCGCgGCG- -5'
8016 3' -63.1 NC_001973.1 + 30463 0.66 0.611729
Target:  5'- --aGUaGCAuUCGCCGCaCACgGCgugGCCGCa -3'
miRNA:   3'- cagCG-CGU-AGCGGCG-GUGgCG---CGGCG- -5'
8016 3' -63.1 NC_001973.1 + 38320 0.66 0.611729
Target:  5'- cUCGCGCAcugCGCCaacaugGCgGCgucaGUGCCGCc -3'
miRNA:   3'- cAGCGCGUa--GCGG------CGgUGg---CGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 109398 0.66 0.611729
Target:  5'- --gGCGCAcUUGCCuaggcGCCGgCGCGUCGUc -3'
miRNA:   3'- cagCGCGU-AGCGG-----CGGUgGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 146963 0.66 0.611729
Target:  5'- uGUUGCGCAU-GC--CCGCCGUGUCGUu -3'
miRNA:   3'- -CAGCGCGUAgCGgcGGUGGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 4739 0.66 0.611729
Target:  5'- aGUCGaaCGCGUCgGCCGUCACCaguucuuugucCGCCGg -3'
miRNA:   3'- -CAGC--GCGUAG-CGGCGGUGGc----------GCGGCg -5'
8016 3' -63.1 NC_001973.1 + 10796 0.66 0.611729
Target:  5'- cGUCGCGUAggCGCCGaCgGCgGCGagaauCGCc -3'
miRNA:   3'- -CAGCGCGUa-GCGGC-GgUGgCGCg----GCG- -5'
8016 3' -63.1 NC_001973.1 + 21490 0.66 0.611729
Target:  5'- --aGCGCGUCGCgGCCcGCCGacucgagGuuGCc -3'
miRNA:   3'- cagCGCGUAGCGgCGG-UGGCg------CggCG- -5'
8016 3' -63.1 NC_001973.1 + 67437 0.66 0.611729
Target:  5'- uUCGCGCAg-GUCgGgCACCGgGCuCGCg -3'
miRNA:   3'- cAGCGCGUagCGG-CgGUGGCgCG-GCG- -5'
8016 3' -63.1 NC_001973.1 + 79768 0.66 0.611729
Target:  5'- -aCGUGUAcUCGUCGaCgAUCGCGCCGa -3'
miRNA:   3'- caGCGCGU-AGCGGC-GgUGGCGCGGCg -5'
8016 3' -63.1 NC_001973.1 + 113490 0.66 0.611729
Target:  5'- cGUUGCGC---GCCGCCAgguUCGUguagGCCGCc -3'
miRNA:   3'- -CAGCGCGuagCGGCGGU---GGCG----CGGCG- -5'
8016 3' -63.1 NC_001973.1 + 132471 0.66 0.611729
Target:  5'- cGUCGgGC-UCGCCGCgAUCaCGUaCGCg -3'
miRNA:   3'- -CAGCgCGuAGCGGCGgUGGcGCG-GCG- -5'
8016 3' -63.1 NC_001973.1 + 133842 0.66 0.610761
Target:  5'- uGUCGacgaugaUGCAcUUGCCGCCGuCCGUGUagCGCa -3'
miRNA:   3'- -CAGC-------GCGU-AGCGGCGGU-GGCGCG--GCG- -5'
8016 3' -63.1 NC_001973.1 + 25895 0.66 0.610761
Target:  5'- cGUUGCGCGUCcaggcaaacggaGCacagcagcuCGCCGCCGCGggcgggcUCGCg -3'
miRNA:   3'- -CAGCGCGUAG------------CG---------GCGGUGGCGC-------GGCG- -5'
8016 3' -63.1 NC_001973.1 + 72721 0.66 0.608825
Target:  5'- uUCGgGCccCGCCGCCACgcgguCGacgaaaagcccccuCGCCGCg -3'
miRNA:   3'- cAGCgCGuaGCGGCGGUG-----GC--------------GCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 22888 0.66 0.605923
Target:  5'- cGUCGCGgcUCGCggaCGUuuacuccagauucuaCACCGCGCCGg -3'
miRNA:   3'- -CAGCGCguAGCG---GCG---------------GUGGCGCGGCg -5'
8016 3' -63.1 NC_001973.1 + 27858 0.66 0.602055
Target:  5'- --gGCGCuggCgGCCGCgGCCGCgGgCGCg -3'
miRNA:   3'- cagCGCGua-G-CGGCGgUGGCG-CgGCG- -5'
8016 3' -63.1 NC_001973.1 + 7930 0.66 0.602055
Target:  5'- -gCGCGUGUgCGCgGCCGgCGUGgUGCa -3'
miRNA:   3'- caGCGCGUA-GCGgCGGUgGCGCgGCG- -5'
8016 3' -63.1 NC_001973.1 + 155035 0.66 0.601089
Target:  5'- --gGCGCAaaccUCaCCcuuccuaGCCGCCGCGCuCGCu -3'
miRNA:   3'- cagCGCGU----AGcGG-------CGGUGGCGCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.