miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8016 5' -55 NC_001973.1 + 123928 0.65 0.946317
Target:  5'- uGUG-GGCGCGcUCGaGAuaugcguGUUGCCCGa -3'
miRNA:   3'- -CACgUCGCGCuAGCaCUu------CAACGGGC- -5'
8016 5' -55 NC_001973.1 + 21486 0.65 0.945433
Target:  5'- gGUG-AGCGCGucgCGgcccgccgacucGAGGUUGCCCa -3'
miRNA:   3'- -CACgUCGCGCua-GCa-----------CUUCAACGGGc -5'
8016 5' -55 NC_001973.1 + 52740 0.66 0.9268
Target:  5'- -gGCGGCGCGucUCGUcGucGUcGCCCu -3'
miRNA:   3'- caCGUCGCGCu-AGCA-CuuCAaCGGGc -5'
8016 5' -55 NC_001973.1 + 132003 0.66 0.921316
Target:  5'- cGUaCAGCcauuucaaaagGCGGUCGUGGAGUUuguaauaggcgGCCCa -3'
miRNA:   3'- -CAcGUCG-----------CGCUAGCACUUCAA-----------CGGGc -5'
8016 5' -55 NC_001973.1 + 42607 0.67 0.91559
Target:  5'- gGUGCGGCGCGAgggCGc--GGUcGCCaCGg -3'
miRNA:   3'- -CACGUCGCGCUa--GCacuUCAaCGG-GC- -5'
8016 5' -55 NC_001973.1 + 145032 0.67 0.909622
Target:  5'- aGUGCGGCGCGAgcgCGUcGAGc-GCCg- -3'
miRNA:   3'- -CACGUCGCGCUa--GCAcUUCaaCGGgc -5'
8016 5' -55 NC_001973.1 + 31118 0.67 0.909622
Target:  5'- gGUGCuuCGCGGUCGUGccGUUGUaCGu -3'
miRNA:   3'- -CACGucGCGCUAGCACuuCAACGgGC- -5'
8016 5' -55 NC_001973.1 + 143110 0.67 0.907168
Target:  5'- cUGCGGCGCGGacgagcaguUCGacuUGGAGgcacaaucgugcgUGCCCGc -3'
miRNA:   3'- cACGUCGCGCU---------AGC---ACUUCa------------ACGGGC- -5'
8016 5' -55 NC_001973.1 + 33289 0.68 0.879132
Target:  5'- gGUGCAGCGCcaacugcuuggacuuGGUCaUGAGGUUGCa-- -3'
miRNA:   3'- -CACGUCGCG---------------CUAGcACUUCAACGggc -5'
8016 5' -55 NC_001973.1 + 83772 0.69 0.802842
Target:  5'- -cGCAGCGCGAccUCGaGucGGUcgcgGCCCGg -3'
miRNA:   3'- caCGUCGCGCU--AGCaCu-UCAa---CGGGC- -5'
8016 5' -55 NC_001973.1 + 31066 0.71 0.696704
Target:  5'- -gGCAGCGUgcgGAUCGaGAAGUUGgCCa -3'
miRNA:   3'- caCGUCGCG---CUAGCaCUUCAACgGGc -5'
8016 5' -55 NC_001973.1 + 9913 0.73 0.604306
Target:  5'- aUGCA-CGCGuUCGUGAccugccgcgggaAGUUGCCCGc -3'
miRNA:   3'- cACGUcGCGCuAGCACU------------UCAACGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.