miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8017 3' -50.5 NC_001973.1 + 54010 0.66 0.997835
Target:  5'- cGCGuaguCGAACGCG---AUCGGGUUGUcgucGGg -3'
miRNA:   3'- -CGU----GCUUGCGCaagUAGUCCAACG----CC- -5'
8017 3' -50.5 NC_001973.1 + 126548 0.66 0.99743
Target:  5'- aCACGGccaGCGUGUggcgCAgccgCGGGUccGCGGg -3'
miRNA:   3'- cGUGCU---UGCGCAa---GUa---GUCCAa-CGCC- -5'
8017 3' -50.5 NC_001973.1 + 50188 0.66 0.997157
Target:  5'- uGCACGAcuugcucggccguguACGCG-UCGcCGGGauugcgUUGCGGc -3'
miRNA:   3'- -CGUGCU---------------UGCGCaAGUaGUCC------AACGCC- -5'
8017 3' -50.5 NC_001973.1 + 102194 0.66 0.997157
Target:  5'- gGCGCGAACGCGacUUCGgagcacaugaccguuUCGGG--GCGa -3'
miRNA:   3'- -CGUGCUUGCGC--AAGU---------------AGUCCaaCGCc -5'
8017 3' -50.5 NC_001973.1 + 139891 0.66 0.996963
Target:  5'- aGCuCGAGCGCGUggUGUCGGuGcUGCGc -3'
miRNA:   3'- -CGuGCUUGCGCAa-GUAGUC-CaACGCc -5'
8017 3' -50.5 NC_001973.1 + 96029 0.66 0.996963
Target:  5'- aGUACGcGCGCGagC-UCGGGcuggGCGGu -3'
miRNA:   3'- -CGUGCuUGCGCaaGuAGUCCaa--CGCC- -5'
8017 3' -50.5 NC_001973.1 + 55203 0.66 0.996428
Target:  5'- -gACGAGCGUGUUC-UCgacgacggcggAGGcgGCGGc -3'
miRNA:   3'- cgUGCUUGCGCAAGuAG-----------UCCaaCGCC- -5'
8017 3' -50.5 NC_001973.1 + 31093 0.66 0.995817
Target:  5'- aGCGaGGGCGCGUUgGUgAuGUUGUGGu -3'
miRNA:   3'- -CGUgCUUGCGCAAgUAgUcCAACGCC- -5'
8017 3' -50.5 NC_001973.1 + 121241 0.67 0.995124
Target:  5'- gGCGCG-GCGCGUcgCAgaaCAGGgugGCGa -3'
miRNA:   3'- -CGUGCuUGCGCAa-GUa--GUCCaa-CGCc -5'
8017 3' -50.5 NC_001973.1 + 102644 0.67 0.994258
Target:  5'- cGCGCGAcuggcaaACGCGcUCGUgcCAGG-UGCGc -3'
miRNA:   3'- -CGUGCU-------UGCGCaAGUA--GUCCaACGCc -5'
8017 3' -50.5 NC_001973.1 + 28867 0.67 0.993824
Target:  5'- uGguUGAGCcCGUUCAguaUCAGGUcguucuggcgcacuaUGCGGu -3'
miRNA:   3'- -CguGCUUGcGCAAGU---AGUCCA---------------ACGCC- -5'
8017 3' -50.5 NC_001973.1 + 123382 0.67 0.993459
Target:  5'- cGCGCGcAACGCGccgUUCGUCAa---GCGGa -3'
miRNA:   3'- -CGUGC-UUGCGC---AAGUAGUccaaCGCC- -5'
8017 3' -50.5 NC_001973.1 + 122656 0.67 0.993459
Target:  5'- aGCACcuGAACGCGgcgcCGUCGGGccagaacgcGCGGc -3'
miRNA:   3'- -CGUG--CUUGCGCaa--GUAGUCCaa-------CGCC- -5'
8017 3' -50.5 NC_001973.1 + 329 0.67 0.992471
Target:  5'- -gACGcACGCGUccaUCAccaacagccUCAGGUUGCa- -3'
miRNA:   3'- cgUGCuUGCGCA---AGU---------AGUCCAACGcc -5'
8017 3' -50.5 NC_001973.1 + 35434 0.67 0.991366
Target:  5'- cGCGC-AACGCGcggUCGUCgacgAGGcgGCGGc -3'
miRNA:   3'- -CGUGcUUGCGCa--AGUAG----UCCaaCGCC- -5'
8017 3' -50.5 NC_001973.1 + 70101 0.67 0.991366
Target:  5'- uGCGCGAGCGCGaaCGccUCGGcGcccGCGGc -3'
miRNA:   3'- -CGUGCUUGCGCaaGU--AGUC-Caa-CGCC- -5'
8017 3' -50.5 NC_001973.1 + 50254 0.68 0.988777
Target:  5'- --uCGGACGCGUUCuugacgAUguGGcUGCGGc -3'
miRNA:   3'- cguGCUUGCGCAAG------UAguCCaACGCC- -5'
8017 3' -50.5 NC_001973.1 + 142580 0.68 0.987275
Target:  5'- -gAUGAAgGCGUUCAgcaguUCGGGgcgcaaGCGGa -3'
miRNA:   3'- cgUGCUUgCGCAAGU-----AGUCCaa----CGCC- -5'
8017 3' -50.5 NC_001973.1 + 35335 0.68 0.987275
Target:  5'- -gAUGAACGCGUUCGUgCuguGG-UGCGa -3'
miRNA:   3'- cgUGCUUGCGCAAGUA-Gu--CCaACGCc -5'
8017 3' -50.5 NC_001973.1 + 57048 0.68 0.983809
Target:  5'- cGC-CGAGCGUG---GUCAGGUUGaggaGGg -3'
miRNA:   3'- -CGuGCUUGCGCaagUAGUCCAACg---CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.