miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8021 3' -54.9 NC_001973.1 + 101405 0.66 0.949096
Target:  5'- gGGCuGCGgacacaGCGUGUACACGUacUUGUCGc -3'
miRNA:   3'- gCCG-UGCa-----CGUACGUGUGCG--AGUAGC- -5'
8021 3' -54.9 NC_001973.1 + 117422 0.66 0.949096
Target:  5'- uGGCcgACGauUGCAUcGCgAC-CGCUCGUCGu -3'
miRNA:   3'- gCCG--UGC--ACGUA-CG-UGuGCGAGUAGC- -5'
8021 3' -54.9 NC_001973.1 + 121306 0.66 0.949096
Target:  5'- gCGGCGCGcGCcgGCggACGCGC-CGaCGa -3'
miRNA:   3'- -GCCGUGCaCGuaCG--UGUGCGaGUaGC- -5'
8021 3' -54.9 NC_001973.1 + 145022 0.66 0.949096
Target:  5'- gCGGCGCccgaGUGCG-GCGCGaGCgCGUCGa -3'
miRNA:   3'- -GCCGUG----CACGUaCGUGUgCGaGUAGC- -5'
8021 3' -54.9 NC_001973.1 + 27871 0.66 0.949096
Target:  5'- gCGGcCGCGgGCGcGgGCGCGCUC-UCGc -3'
miRNA:   3'- -GCC-GUGCaCGUaCgUGUGCGAGuAGC- -5'
8021 3' -54.9 NC_001973.1 + 81089 0.66 0.949096
Target:  5'- uGGCGuuCGcGCuggGCGCGgGCUCGUUGa -3'
miRNA:   3'- gCCGU--GCaCGua-CGUGUgCGAGUAGC- -5'
8021 3' -54.9 NC_001973.1 + 82003 0.66 0.947815
Target:  5'- cCGGUAggauuuCGUGCGacagcgccgacaccUGCACGCGCUCcagCa -3'
miRNA:   3'- -GCCGU------GCACGU--------------ACGUGUGCGAGua-Gc -5'
8021 3' -54.9 NC_001973.1 + 65567 0.66 0.944743
Target:  5'- -cGCGCGcGC-UGCGCGaGCUCGUCu -3'
miRNA:   3'- gcCGUGCaCGuACGUGUgCGAGUAGc -5'
8021 3' -54.9 NC_001973.1 + 99974 0.66 0.944743
Target:  5'- uGGCGCGcggcUGCAgguaacGCgACAUGCUCAcguUCGu -3'
miRNA:   3'- gCCGUGC----ACGUa-----CG-UGUGCGAGU---AGC- -5'
8021 3' -54.9 NC_001973.1 + 32365 0.66 0.940154
Target:  5'- uGaGCGUGUGCAUGCACGUGCcgaaAUCGa -3'
miRNA:   3'- gC-CGUGCACGUACGUGUGCGag--UAGC- -5'
8021 3' -54.9 NC_001973.1 + 102640 0.66 0.940154
Target:  5'- aCGGCGCGcgacugGCAa--ACGCGCUCGUg- -3'
miRNA:   3'- -GCCGUGCa-----CGUacgUGUGCGAGUAgc -5'
8021 3' -54.9 NC_001973.1 + 159825 0.66 0.935325
Target:  5'- gGGcCugGUGgG-GCGCACGUUgAUCGu -3'
miRNA:   3'- gCC-GugCACgUaCGUGUGCGAgUAGC- -5'
8021 3' -54.9 NC_001973.1 + 89220 0.66 0.935325
Target:  5'- aGGUACGUuucuaacgGCAgauUGCcgucguGCAgGCUCGUCGg -3'
miRNA:   3'- gCCGUGCA--------CGU---ACG------UGUgCGAGUAGC- -5'
8021 3' -54.9 NC_001973.1 + 152432 0.66 0.930257
Target:  5'- aCGGgGCG-GC--GCGCAgGCUUAUCGc -3'
miRNA:   3'- -GCCgUGCaCGuaCGUGUgCGAGUAGC- -5'
8021 3' -54.9 NC_001973.1 + 69575 0.66 0.930257
Target:  5'- uCGGCACGcUGU-UGUACcCGCcCGUCGu -3'
miRNA:   3'- -GCCGUGC-ACGuACGUGuGCGaGUAGC- -5'
8021 3' -54.9 NC_001973.1 + 36576 0.67 0.924947
Target:  5'- gGGCGCGUugacgcgcGCGcUGCACuacaugggcgACGUUCGUCa -3'
miRNA:   3'- gCCGUGCA--------CGU-ACGUG----------UGCGAGUAGc -5'
8021 3' -54.9 NC_001973.1 + 61682 0.67 0.919396
Target:  5'- gCGGCGCGaagcgGCGUcgGCGCGCUCGa-- -3'
miRNA:   3'- -GCCGUGCa----CGUAcgUGUGCGAGUagc -5'
8021 3' -54.9 NC_001973.1 + 123108 0.67 0.919396
Target:  5'- gCGGCAgGuUGUcgGCGCGCGCg-AUCc -3'
miRNA:   3'- -GCCGUgC-ACGuaCGUGUGCGagUAGc -5'
8021 3' -54.9 NC_001973.1 + 34218 0.67 0.919396
Target:  5'- uGGCcagguCGUGCA-GCuCGCGCgCGUCGu -3'
miRNA:   3'- gCCGu----GCACGUaCGuGUGCGaGUAGC- -5'
8021 3' -54.9 NC_001973.1 + 22500 0.67 0.919396
Target:  5'- aGGCugcCGUGCGUGCGCgACGaccagUGUCGc -3'
miRNA:   3'- gCCGu--GCACGUACGUG-UGCga---GUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.