miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8023 5' -60 NC_001973.1 + 141799 0.66 0.795065
Target:  5'- cGCC-CGCCGaACGcuaacGCGaCGCC-CCGCu -3'
miRNA:   3'- cUGGuGUGGC-UGCa----CGC-GCGGuGGCG- -5'
8023 5' -60 NC_001973.1 + 124233 0.66 0.795065
Target:  5'- cGGCCAgGCCGcCGUuuacgaaGCGCUGCUGUg -3'
miRNA:   3'- -CUGGUgUGGCuGCAcg-----CGCGGUGGCG- -5'
8023 5' -60 NC_001973.1 + 42458 0.66 0.795065
Target:  5'- aAUCGCGCCGACGc-CGaCGCCGaCGCc -3'
miRNA:   3'- cUGGUGUGGCUGCacGC-GCGGUgGCG- -5'
8023 5' -60 NC_001973.1 + 33345 0.66 0.795065
Target:  5'- cGGCCGCGgaUGAUGccCGUGCCgGCCGCg -3'
miRNA:   3'- -CUGGUGUg-GCUGCacGCGCGG-UGGCG- -5'
8023 5' -60 NC_001973.1 + 99806 0.66 0.795065
Target:  5'- uGCCguuuucguaaACGCUcGCGU-CGCGCUGCCGCu -3'
miRNA:   3'- cUGG----------UGUGGcUGCAcGCGCGGUGGCG- -5'
8023 5' -60 NC_001973.1 + 95088 0.66 0.795065
Target:  5'- cGCUGCAgCGcuCGUGCGCGg-GCCGCg -3'
miRNA:   3'- cUGGUGUgGCu-GCACGCGCggUGGCG- -5'
8023 5' -60 NC_001973.1 + 117829 0.66 0.794194
Target:  5'- aGCCGgACaaGGCGgugcugcUGUGCGCCAgCCGCu -3'
miRNA:   3'- cUGGUgUGg-CUGC-------ACGCGCGGU-GGCG- -5'
8023 5' -60 NC_001973.1 + 7730 0.66 0.786289
Target:  5'- cGACUgacgcuggaGCACCGguGCG-GCGCGa-ACCGCg -3'
miRNA:   3'- -CUGG---------UGUGGC--UGCaCGCGCggUGGCG- -5'
8023 5' -60 NC_001973.1 + 68020 0.66 0.786289
Target:  5'- aGACUgGCGCCcGCGUcGCGCGgCACCa- -3'
miRNA:   3'- -CUGG-UGUGGcUGCA-CGCGCgGUGGcg -5'
8023 5' -60 NC_001973.1 + 152340 0.66 0.786289
Target:  5'- ---uGCGCgGGCGggGCGCGauagCGCCGCg -3'
miRNA:   3'- cuggUGUGgCUGCa-CGCGCg---GUGGCG- -5'
8023 5' -60 NC_001973.1 + 72825 0.66 0.786289
Target:  5'- uGACgAgGCCGGCG-GC-CGCCG-CGCa -3'
miRNA:   3'- -CUGgUgUGGCUGCaCGcGCGGUgGCG- -5'
8023 5' -60 NC_001973.1 + 126545 0.66 0.786289
Target:  5'- cGCaCACgGCCaGCGUGUgGCGCaGCCGCg -3'
miRNA:   3'- cUG-GUG-UGGcUGCACG-CGCGgUGGCG- -5'
8023 5' -60 NC_001973.1 + 158925 0.66 0.777385
Target:  5'- -gUCGCGCCG-CGcGCGaccgaGCCGcCCGCg -3'
miRNA:   3'- cuGGUGUGGCuGCaCGCg----CGGU-GGCG- -5'
8023 5' -60 NC_001973.1 + 106880 0.66 0.777385
Target:  5'- --gCGCGCCGGCcgaaccGUGCGCGCgGCaaucgaccgaagCGCg -3'
miRNA:   3'- cugGUGUGGCUG------CACGCGCGgUG------------GCG- -5'
8023 5' -60 NC_001973.1 + 21720 0.66 0.777385
Target:  5'- aACCGCGCCG-C-UG-GCGUCGCCGg -3'
miRNA:   3'- cUGGUGUGGCuGcACgCGCGGUGGCg -5'
8023 5' -60 NC_001973.1 + 68897 0.66 0.768359
Target:  5'- cGACUGCGCC-AUGUGcCGCGaCCACUa- -3'
miRNA:   3'- -CUGGUGUGGcUGCAC-GCGC-GGUGGcg -5'
8023 5' -60 NC_001973.1 + 27170 0.66 0.768359
Target:  5'- cGACCGuCGCCGAccgguCGUGgGUG-CACCGa -3'
miRNA:   3'- -CUGGU-GUGGCU-----GCACgCGCgGUGGCg -5'
8023 5' -60 NC_001973.1 + 67628 0.66 0.768359
Target:  5'- cGGCCGCGuCCGA-GaGCGUGCCGaggaacaCGCa -3'
miRNA:   3'- -CUGGUGU-GGCUgCaCGCGCGGUg------GCG- -5'
8023 5' -60 NC_001973.1 + 58437 0.66 0.76745
Target:  5'- aGCCcuCGCCGuCGcccUGCGUGCCcgaaauaGCCGCc -3'
miRNA:   3'- cUGGu-GUGGCuGC---ACGCGCGG-------UGGCG- -5'
8023 5' -60 NC_001973.1 + 57965 0.66 0.76745
Target:  5'- uGCaCGCGCCGuCGcccuucaUGUGCGCCACuCGa -3'
miRNA:   3'- cUG-GUGUGGCuGC-------ACGCGCGGUG-GCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.