miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8025 3' -56.5 NC_001973.1 + 39322 0.66 0.929686
Target:  5'- gGCUCGCGCaCUgGUGUCG--CAACagacggCGCa -3'
miRNA:   3'- -CGAGCGCG-GG-CACAGCaaGUUGg-----GCG- -5'
8025 3' -56.5 NC_001973.1 + 34232 0.66 0.929686
Target:  5'- aGCUCGCGCgCGUcGUUGcugUCcAUCaCGCc -3'
miRNA:   3'- -CGAGCGCGgGCA-CAGCa--AGuUGG-GCG- -5'
8025 3' -56.5 NC_001973.1 + 122469 0.66 0.929686
Target:  5'- --aCGCGCUCGUcGUCGUcgcaGAUuuGCa -3'
miRNA:   3'- cgaGCGCGGGCA-CAGCAag--UUGggCG- -5'
8025 3' -56.5 NC_001973.1 + 34984 0.66 0.929686
Target:  5'- gGUgugCGUGCCCGcG-CGUuuccUCGACgCCGCc -3'
miRNA:   3'- -CGa--GCGCGGGCaCaGCA----AGUUG-GGCG- -5'
8025 3' -56.5 NC_001973.1 + 96330 0.66 0.929177
Target:  5'- --gUGCGCCuCGUGcagaaacaggcgaUCGcgCGAUCCGCu -3'
miRNA:   3'- cgaGCGCGG-GCAC-------------AGCaaGUUGGGCG- -5'
8025 3' -56.5 NC_001973.1 + 62603 0.66 0.924487
Target:  5'- cGCUCGaGCgaCGcGUCGUggUCGACgCGCg -3'
miRNA:   3'- -CGAGCgCGg-GCaCAGCA--AGUUGgGCG- -5'
8025 3' -56.5 NC_001973.1 + 97300 0.66 0.924487
Target:  5'- -aUUGCGCCgaCGUGaCGUUCGACgCCa- -3'
miRNA:   3'- cgAGCGCGG--GCACaGCAAGUUG-GGcg -5'
8025 3' -56.5 NC_001973.1 + 21611 0.66 0.922882
Target:  5'- uGCUCGCGUCgccgaacucgugcaCGUGgaagcCGUgCAGgCCGCg -3'
miRNA:   3'- -CGAGCGCGG--------------GCACa----GCAaGUUgGGCG- -5'
8025 3' -56.5 NC_001973.1 + 155374 0.66 0.921257
Target:  5'- uCUCGgGCCCGUugagcccgcucucgaGccCGUUgAGCCUGCu -3'
miRNA:   3'- cGAGCgCGGGCA---------------Ca-GCAAgUUGGGCG- -5'
8025 3' -56.5 NC_001973.1 + 10065 0.66 0.919058
Target:  5'- cGCagGCGCCCGUGaaUCc-UgAACCCGg -3'
miRNA:   3'- -CGagCGCGGGCAC--AGcaAgUUGGGCg -5'
8025 3' -56.5 NC_001973.1 + 72313 0.66 0.919058
Target:  5'- --aCGCGCCCGcuaggGUCaacagaGUUCAaGCCCGa -3'
miRNA:   3'- cgaGCGCGGGCa----CAG------CAAGU-UGGGCg -5'
8025 3' -56.5 NC_001973.1 + 74284 0.66 0.919058
Target:  5'- gGC-CG-GCgCCGUG-CGUUCGgcacggaucGCCCGCc -3'
miRNA:   3'- -CGaGCgCG-GGCACaGCAAGU---------UGGGCG- -5'
8025 3' -56.5 NC_001973.1 + 88891 0.66 0.919058
Target:  5'- -gUCGUGCaguCCGUGcuUCGcgCGaaACCCGCa -3'
miRNA:   3'- cgAGCGCG---GGCAC--AGCaaGU--UGGGCG- -5'
8025 3' -56.5 NC_001973.1 + 138551 0.66 0.919058
Target:  5'- uGCaCGCGCUCGccGUCGUauuugacuUCGGCCagCGCg -3'
miRNA:   3'- -CGaGCGCGGGCa-CAGCA--------AGUUGG--GCG- -5'
8025 3' -56.5 NC_001973.1 + 7969 0.66 0.919058
Target:  5'- cGCguaCGCGCgaUUGUGcgcgCGUaCGACCCGCc -3'
miRNA:   3'- -CGa--GCGCG--GGCACa---GCAaGUUGGGCG- -5'
8025 3' -56.5 NC_001973.1 + 8442 0.66 0.913401
Target:  5'- -gUCGCGCCCGUcGaCGaaCcGCUCGCc -3'
miRNA:   3'- cgAGCGCGGGCA-CaGCaaGuUGGGCG- -5'
8025 3' -56.5 NC_001973.1 + 124500 0.66 0.907516
Target:  5'- cGCUCugccgGCGCuggCCGacgCGUUCAAUCCGUa -3'
miRNA:   3'- -CGAG-----CGCG---GGCacaGCAAGUUGGGCG- -5'
8025 3' -56.5 NC_001973.1 + 124001 0.66 0.907516
Target:  5'- -gUCGCgGCCUGaccaGUCGggCGACgCGCg -3'
miRNA:   3'- cgAGCG-CGGGCa---CAGCaaGUUGgGCG- -5'
8025 3' -56.5 NC_001973.1 + 95312 0.66 0.907516
Target:  5'- aGCgCGCGCCgCGcguucGUCGagUCGGCgCGCg -3'
miRNA:   3'- -CGaGCGCGG-GCa----CAGCa-AGUUGgGCG- -5'
8025 3' -56.5 NC_001973.1 + 52855 0.66 0.901406
Target:  5'- cGCgCGCGgCCG-GUCGgucCAGCUgGCg -3'
miRNA:   3'- -CGaGCGCgGGCaCAGCaa-GUUGGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.