miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8025 5' -54 NC_001973.1 + 111343 0.66 0.944873
Target:  5'- -cGCUGGUGCGCGACcacCGGcuCAu-- -3'
miRNA:   3'- caCGACCACGUGCUGu--GCCacGUuuu -5'
8025 5' -54 NC_001973.1 + 94573 0.66 0.929984
Target:  5'- -cGCUGGUGgAggugagcccCGACGCGGUcGCGu-- -3'
miRNA:   3'- caCGACCACgU---------GCUGUGCCA-CGUuuu -5'
8025 5' -54 NC_001973.1 + 45993 0.66 0.929984
Target:  5'- -cGCUGGUGcCGCGAUGcCGGcgcGCGAGc -3'
miRNA:   3'- caCGACCAC-GUGCUGU-GCCa--CGUUUu -5'
8025 5' -54 NC_001973.1 + 87118 0.67 0.900099
Target:  5'- cGUGCgcgGcGUGCGCG-CGCcGGUGCGc-- -3'
miRNA:   3'- -CACGa--C-CACGUGCuGUG-CCACGUuuu -5'
8025 5' -54 NC_001973.1 + 123891 0.67 0.900099
Target:  5'- -cGCUGGUGCACGuGCucgacuCGG-GCAc-- -3'
miRNA:   3'- caCGACCACGUGC-UGu-----GCCaCGUuuu -5'
8025 5' -54 NC_001973.1 + 97975 0.67 0.893371
Target:  5'- -gGCacGG-GCACGACGCGGUcGCGGu- -3'
miRNA:   3'- caCGa-CCaCGUGCUGUGCCA-CGUUuu -5'
8025 5' -54 NC_001973.1 + 94712 0.67 0.893371
Target:  5'- gGUGUgGGUGgGCGAgGCGGccgGCAAGc -3'
miRNA:   3'- -CACGaCCACgUGCUgUGCCa--CGUUUu -5'
8025 5' -54 NC_001973.1 + 30387 0.68 0.8864
Target:  5'- gGUGCgGGccgGCGCGGCGgCGGcgGCGGAGg -3'
miRNA:   3'- -CACGaCCa--CGUGCUGU-GCCa-CGUUUU- -5'
8025 5' -54 NC_001973.1 + 54047 0.68 0.8864
Target:  5'- uUGUUGG-GCACGGgGCcGUGCAAGc -3'
miRNA:   3'- cACGACCaCGUGCUgUGcCACGUUUu -5'
8025 5' -54 NC_001973.1 + 10484 0.68 0.87919
Target:  5'- cGUGCUGGgguUGCACGA-GCGG-GCGc-- -3'
miRNA:   3'- -CACGACC---ACGUGCUgUGCCaCGUuuu -5'
8025 5' -54 NC_001973.1 + 98290 0.68 0.864073
Target:  5'- -cGCUGGcgUGUACuGACACGGgucGCAAu- -3'
miRNA:   3'- caCGACC--ACGUG-CUGUGCCa--CGUUuu -5'
8025 5' -54 NC_001973.1 + 14623 0.69 0.839747
Target:  5'- cUGUcGGUGCGCGACuacgucaaucUGGUGCAAGc -3'
miRNA:   3'- cACGaCCACGUGCUGu---------GCCACGUUUu -5'
8025 5' -54 NC_001973.1 + 8850 0.7 0.804544
Target:  5'- cUGCUGGcGCgGCGACACGG-GCu--- -3'
miRNA:   3'- cACGACCaCG-UGCUGUGCCaCGuuuu -5'
8025 5' -54 NC_001973.1 + 89538 0.7 0.78591
Target:  5'- -gGC-GGUGgGCGAgGCGGUGCGc-- -3'
miRNA:   3'- caCGaCCACgUGCUgUGCCACGUuuu -5'
8025 5' -54 NC_001973.1 + 95124 0.7 0.75688
Target:  5'- -aGCUggcGGUGCACGACccguggGCGGccgUGCAGAAg -3'
miRNA:   3'- caCGA---CCACGUGCUG------UGCC---ACGUUUU- -5'
8025 5' -54 NC_001973.1 + 145158 0.73 0.632917
Target:  5'- gGUuCUGGuUGCgcaccaagagcaACGACGCGGUGCAAAAg -3'
miRNA:   3'- -CAcGACC-ACG------------UGCUGUGCCACGUUUU- -5'
8025 5' -54 NC_001973.1 + 140127 0.73 0.611811
Target:  5'- aUGCUGGUGUucuCgGACugGGUGCGc-- -3'
miRNA:   3'- cACGACCACGu--G-CUGugCCACGUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.